ENSDARG00000026395


Danio rerio

Features
Gene ID: ENSDARG00000026395
  
Biological name :rfx4
  
Synonyms : A2BGA0 / regulatory factor X, 4 / rfx4
  
Possible biological names infered from orthology : Q33E94 / Q7TNK1 / Transcription factor RFX4
  
Species: Danio rerio
  
Chr. number: 18
Strand: -1
Band:
Gene start: 15334117
Gene end: 15373620
  
Corresponding Affymetrix probe sets: Dr.20543.1.S1_at (Zebrafish Array)   NM_205712_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000032295
NCBI entrez gene - 403016     See in Manteia.
RefSeq - NM_205712
RefSeq Peptide - NP_991275
swissprot - A2BGA0
ZFIN ID - ZDB-GENE-040909-2
Ensembl - ENSDARG00000026395
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RFX4ENSGALG00000012647Gallus gallus
 RFX4ENSG00000111783Homo sapiens
 Rfx4ENSMUSG00000020037Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rfx6 / Q5RJA1 / regulatory factor X, 6 / Q8C7R7* / Q8HWS3* / DNA-binding protein RFX6 *ENSDARG0000004170234
rfx2 / Q5EAP5 / regulatory factor X, 2 (influences HLA class II expression) / P48379* / P48378* / regulatory factor X2* / DNA-binding protein RFX2 *ENSDARG0000001357524
rfx3 / regulatory factor X, 3 (influences HLA class II expression) / P48380* / regulatory factor X3*ENSDARG0000001455024
rfx1a / regulatory factor X, 1a (influences HLA class II expression) / RFX1* / P22670* / P48377* / regulatory factor X1* / MHC class II regulatory factor RFX1 *ENSDARG0000000588324
rfx1b / regulatory factor X, 1b (influences HLA class II expression) / RFX1* / P22670* / P48377* / regulatory factor X1* / MHC class II regulatory factor RFX1 *ENSDARG0000007590423
rfx7a / regulatory factor X7a / RFX7* / Q2KHR2* / regulatory factor X7*ENSDARG0000007723715
rfx7b / regulatory factor X7b / RFX7* / Q2KHR2* / regulatory factor X7*ENSDARG0000010369114
rfx5 / regulatory factor X, 5 / P48382* / Q9JL61* / Mus musculus regulatory factor X, 5 (influences HLA class II expression) (Rfx5), transcript variant 2, mRNA.*ENSDARG000000632589


Protein motifs (from Interpro)
Interpro ID Name
 IPR003150  DNA-binding RFX-type winged-helix domain
 IPR011991  ArsR-like helix-turn-helix domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0021914 negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning IBA
 biological_processGO:0060271 cilium assembly IBA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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