ENSGALG00000010349


Gallus gallus

Features
Gene ID: ENSGALG00000010349
  
Biological name :POLR1C
  
Synonyms : POLR1C / RNA polymerase I subunit C
  
Possible biological names infered from orthology : DNA-directed RNA polymerases I and III subunit RPAC1 / O15160 / P52432
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 30993718
Gene end: 30997091
  
Corresponding Affymetrix probe sets: Gga.1059.1.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000016829
Ensembl peptide - ENSGALP00000063191
Ensembl peptide - ENSGALP00000061621
Ensembl peptide - ENSGALP00000060100
Ensembl peptide - ENSGALP00000054678
Ensembl peptide - ENSGALP00000047369
Ensembl peptide - ENSGALP00000046857
NCBI entrez gene - 421452     See in Manteia.
RefSeq - NM_001277630
RefSeq - NM_001277631
RefSeq - XM_015283717
RefSeq Peptide - NP_001264559
RefSeq Peptide - NP_001264560
swissprot - A0A1D5P3W3
swissprot - E1C548
swissprot - A0A1D5P2G2
swissprot - A0A1L1RWH8
swissprot - A0A1L1RS34
swissprot - A0A1L1RMV4
swissprot - A0A1D5PP80
Ensembl - ENSGALG00000010349
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 polr1cENSDARG00000039400Danio rerio
 O15160ENSG00000171453Homo sapiens
 P52432ENSMUSG00000067148Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001514  DNA-directed RNA polymerase, 30-40kDa subunit, conserved site
 IPR009025  DNA-directed RNA polymerase, RBP11-like dimerisation domain
 IPR011262  DNA-directed RNA polymerase, insert domain
 IPR011263  DNA-directed RNA polymerase, RpoA/D/Rpb3-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006360 transcription by RNA polymerase I IEA
 biological_processGO:0006383 transcription by RNA polymerase III IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005666 DNA-directed RNA polymerase III complex IBA
 cellular_componentGO:0005736 DNA-directed RNA polymerase I complex IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0001054 RNA polymerase I activity IBA
 molecular_functionGO:0001056 RNA polymerase III activity IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
B-WICH complex positively regulates rRNA expression
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase I Transcription Termination
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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