ENSGALG00000010669


Gallus gallus

Features
Gene ID: ENSGALG00000010669
  
Biological name :TDP1
  
Synonyms : TDP1 / tyrosyl-DNA phosphodiesterase 1
  
Possible biological names infered from orthology : Q9NUW8
  
Species: Gallus gallus
  
Chr. number: 5
Strand: 1
Band:
Gene start: 43717633
Gene end: 43750129
  
Corresponding Affymetrix probe sets: Gga.16007.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000017339
NCBI entrez gene - 423403     See in Manteia.
RefSeq - XM_421313
swissprot - F1NSQ5
Ensembl - ENSGALG00000010669
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tdp1ENSDARG00000073866Danio rerio
 TDP1ENSG00000042088Homo sapiens
 Tdp1ENSMUSG00000021177Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR010347  Tyrosyl-DNA phosphodiesterase I
 IPR027415  Tyrosyl-DNA phosphodiesterase, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000012 single strand break repair IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006302 double-strand break repair IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0003690 double-stranded DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IEA
 molecular_functionGO:0008081 phosphoric diester hydrolase activity IEA
 molecular_functionGO:0017005 3"-tyrosyl-DNA phosphodiesterase activity IEA


Pathways (from Reactome)
Pathway description
Nonhomologous End-Joining (NHEJ)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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