ENSGALG00000011392


Gallus gallus

Features
Gene ID: ENSGALG00000011392
  
Biological name :MSH4
  
Synonyms : MSH4 / mutS homolog 4
  
Possible biological names infered from orthology : MutS protein homolog 4 / O15457 / Q99MT2
  
Species: Gallus gallus
  
Chr. number: 8
Strand: 1
Band:
Gene start: 29900571
Gene end: 29924458
  
Corresponding Affymetrix probe sets: Gga.7885.2.S1_at (Chicken Array)   GgaAffx.20951.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000018559
Ensembl peptide - ENSGALP00000057727
Ensembl peptide - ENSGALP00000056472
Ensembl peptide - ENSGALP00000055788
Ensembl peptide - ENSGALP00000045005
NCBI entrez gene - 424725     See in Manteia.
RefSeq - XM_422549
RefSeq - XM_004936906
RefSeq - XM_015291072
RefSeq - XM_015291073
RefSeq - XM_015291075
RefSeq - XM_015291076
RefSeq - XM_004936904
swissprot - A0A1D5PU70
swissprot - A0A1D5PSA4
swissprot - A0A1D5NXB1
swissprot - F1P4E2
swissprot - A0A1D5PXN0
Ensembl - ENSGALG00000011392
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 msh4ENSDARG00000075826Danio rerio
 MSH4ENSG00000057468Homo sapiens
 Msh4ENSMUSG00000005493Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000432  DNA mismatch repair protein MutS, C-terminal
 IPR007696  DNA mismatch repair protein MutS, core
 IPR007860  DNA mismatch repair protein MutS, connector domain
 IPR007861  DNA mismatch repair protein MutS, clamp
 IPR011184  DNA mismatch repair Msh2-type
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001541 ovarian follicle development IEA
 biological_processGO:0006298 mismatch repair IEA
 biological_processGO:0007129 synapsis IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0007292 female gamete generation IEA
 biological_processGO:0051026 chiasma assembly IBA
 biological_processGO:0051321 meiotic cell cycle IEA
 cellular_componentGO:0000793 condensed chromosome IEA
 cellular_componentGO:0000794 condensed nuclear chromosome IEA
 cellular_componentGO:0000795 synaptonemal complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005713 recombination nodule IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008094 DNA-dependent ATPase activity IBA
 molecular_functionGO:0030983 mismatched DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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