ENSGALG00000011475


Gallus gallus

Features
Gene ID: ENSGALG00000011475
  
Biological name :SMARCAL1
  
Synonyms : SMARCAL1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1
  
Possible biological names infered from orthology : Q8BJL0 / Q9NZC9 / SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
  
Species: Gallus gallus
  
Chr. number: 7
Strand: -1
Band:
Gene start: 23464946
Gene end: 23495082
  
Corresponding Affymetrix probe sets: GgaAffx.7278.1.S1_at (Chicken Array)   GgaAffx.7278.2.S1_at (Chicken Array)   GgaAffx.7278.2.S1_s_at (Chicken Array)   GgaAffx.7279.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000018686
NCBI entrez gene - 396031     See in Manteia.
RefSeq - XM_004942887
RefSeq - XM_422070
RefSeq - XM_015290050
RefSeq - XM_015290051
swissprot - F1P0X4
Ensembl - ENSGALG00000011475
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smarcal1ENSDARG00000102265Danio rerio
 Q9NZC9ENSG00000138375Homo sapiens
 Q8BJL0ENSMUSG00000039354Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ZRANB3 / zinc finger RANBP2-type containing 3 / Q5FWF4* / Q6NZP1* / zinc finger, RAN-binding domain containing 3*ENSGALG0000001222336
BTAF1 / B-TFIID TATA-box binding protein associated factor 1 / O14981*ENSGALG0000003059825


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR001650  Helicase, C-terminal
 IPR010003  HARP domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000733 DNA strand renaturation IEA
 biological_processGO:0006259 DNA metabolic process IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0031297 replication fork processing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005662 DNA replication factor A complex IEA
 cellular_componentGO:0035861 site of double-strand break IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008094 DNA-dependent ATPase activity IEA
 molecular_functionGO:0036310 annealing helicase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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