ENSG00000138375


Homo sapiens

Features
Gene ID: ENSG00000138375
  
Biological name :SMARCAL1
  
Synonyms : Q9NZC9 / SMARCAL1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q35
Gene start: 216412414
Gene end: 216483053
  
Corresponding Affymetrix probe sets: 218452_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000390248
Ensembl peptide - ENSP00000405077
Ensembl peptide - ENSP00000402967
Ensembl peptide - ENSP00000400473
Ensembl peptide - ENSP00000398969
Ensembl peptide - ENSP00000394410
Ensembl peptide - ENSP00000392997
Ensembl peptide - ENSP00000349823
Ensembl peptide - ENSP00000350940
Ensembl peptide - ENSP00000375974
NCBI entrez gene - 50485     See in Manteia.
OMIM - 606622
RefSeq - NM_014140
RefSeq - XM_017004228
RefSeq - XM_005246632
RefSeq - NM_001127207
RefSeq - XM_005246631
RefSeq Peptide - NP_054859
RefSeq Peptide - NP_001120679
swissprot - Q9NZC9
swissprot - H7C1I3
swissprot - C9JP32
swissprot - C9JHQ1
swissprot - C9J8F8
swissprot - C9J6I8
swissprot - H7BYI2
swissprot - H7C051
swissprot - C9JS37
Ensembl - ENSG00000138375
  
Related genetic diseases (OMIM): 242900 - Schimke immunoosseous dysplasia, 242900
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smarcal1ENSDARG00000102265Danio rerio
 SMARCAL1ENSGALG00000011475Gallus gallus
 Q8BJL0ENSMUSG00000039354Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q5FWF4 / ZRANB3 / zinc finger RANBP2-type containing 3ENSG0000012198823
BTAF1 / O14981 / B-TFIID TATA-box binding protein associated factor 1ENSG0000009556422


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR001650  Helicase, C-terminal
 IPR010003  HARP domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR030101  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000733 DNA strand renaturation IEA
 biological_processGO:0006259 DNA metabolic process IMP
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IMP
 biological_processGO:0006974 cellular response to DNA damage stimulus IMP
 biological_processGO:0031297 replication fork processing IEA
 biological_processGO:0090656 t-circle formation TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005662 DNA replication factor A complex IDA
 cellular_componentGO:0035861 site of double-strand break IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008094 DNA-dependent ATPase activity IMP
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0036310 annealing helicase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000093 Proteinuria 
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 HP:0000097 Focal segmental glomerulosclerosis 
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 HP:0000100 Nephrotic syndrome 
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 HP:0000414 Bulbous nose 
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 HP:0000470 Short neck 
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 HP:0000483 Astigmatism 
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 HP:0000545 Myopia 
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 HP:0000691 Microdontia 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000926 Platyspondyly 
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0000995 Pigmented nevi "The presence of increased numbers of pigmented nevi, that is, of small, dark spots on the skin. Pigmented nevi are also known as melanocytic nevi or moles." [HPO:curators]
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 HP:0001034 Hyperpigmented macules 
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 HP:0001270 Motor retardation 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001538 Protuberant abdomen "A thrusting or bulging out of the abdomen." [HPO:curators]
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 HP:0001620 High pitched voice 
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 HP:0001873 Thrombocytopenia 
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 HP:0001875 Neutropenia 
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 HP:0001888 Lymphopenia 
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 HP:0001903 Anemia 
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 HP:0002208 Coarse hair 
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 HP:0002213 Fine hair 
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 HP:0002326 Transient ischemic attack 
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 HP:0002515 Waddling gait 
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 HP:0002634 Arteriosclerosis 
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 HP:0002655 Spondyloepiphyseal dysplasia 
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 HP:0002719 Recurrent infections 
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 HP:0002827 Dislocated hips 
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 HP:0002843 Abnormality of T-cells "An abnormality of B cells, which are lymphocytes whose principle function in the adaptive immune system is to mediate cell-mediated immunity." [HPO:curators]
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 HP:0002925 Increased serum thyroid-stimulating hormone (TSH) 
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 HP:0002938 Lumbar hyperlordosis 
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 HP:0002942 Thoracic kyphosis 
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 HP:0003090 Small capital femoral epiphyses 
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 HP:0003182 Shallow acetabular fossae 
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 HP:0003300 Ovoid vertebral bodies 
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 HP:0003307 Hyperlordosis 
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 HP:0003521 Short stature, disproportionate (short trunk) 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005374 Cellular immunodeficiency 
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 HP:0005930 Abnormality of the epiphyses 
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 HP:0006453 Laterally displaced femoral heads 
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 HP:0007565 Multiple cafe-au-lait spots 
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 HP:0007759 Corneal opacities, not impairing visual acuity 
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 HP:0010701 Abnormal immunoglobulin level "An abnormal deviation from normal levels of immunoglobulins in blood." [HPO:probinson]
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 HP:0100820 Glomerulopathy "Inflammatory or noninflammatory diseases affecting the glomeruli of the nephron." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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