ENSGALG00000012607


Gallus gallus

Features
Gene ID: ENSGALG00000012607
  
Biological name :ZCCHC6
  
Synonyms : ZCCHC6 / zinc finger CCHC-type containing 6
  
Possible biological names infered from orthology : Q5VYS8 / zinc finger, CCHC domain containing 6
  
Species: Gallus gallus
  
Chr. number: Z
Strand: -1
Band:
Gene start: 40830409
Gene end: 40863333
  
Corresponding Affymetrix probe sets: Gga.9869.1.S1_at (Chicken Array)   GgaAffx.23946.1.S1_s_at (Chicken Array)   GgaAffx.8000.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000047255
Ensembl peptide - ENSGALP00000033266
NCBI entrez gene - 100857368     See in Manteia.
RefSeq - XM_015280231
RefSeq - NM_001271947
RefSeq - XM_015280230
RefSeq Peptide - NP_001258876
swissprot - F1NJM6
swissprot - A0A1D5P3K0
Ensembl - ENSGALG00000012607
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CABZ01032476.1ENSDARG00000074645Danio rerio
 Q5VYS8ENSG00000083223Homo sapiens
 Zcchc6ENSMUSG00000035248Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ZCCHC11 / zinc finger CCHC-type containing 11 / B2RX14* / Q5TAX3* / zinc finger, CCHC domain containing 11*ENSGALG0000001062940
PAPD4 / poly(A) RNA polymerase D4, non-canonical / Q6PIY7* / Q91YI6* / PAP associated domain containing 4*ENSGALG000000148109
MTPAP / mitochondrial poly(A) polymerase / Q9D0D3* / Q9NVV4* / Poly(A) RNA polymerase, mitochondrial *ENSGALG000000073516


Protein motifs (from Interpro)
Interpro ID Name
 IPR001878  Zinc finger, CCHC-type
 IPR002058  PAP/25A-associated


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0031123 RNA 3"-end processing IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0050265 RNA uridylyltransferase activity IEA


Pathways (from Reactome)
Pathway description
Deadenylation of mRNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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