ENSG00000083223


Homo sapiens

Features
Gene ID: ENSG00000083223
  
Biological name :ZCCHC6
  
Synonyms : Q5VYS8 / ZCCHC6 / zinc finger CCHC-type containing 6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: -1
Band: q21.33
Gene start: 86287733
Gene end: 86354454
  
Corresponding Affymetrix probe sets: 220933_s_at (Human Genome U133 Plus 2.0 Array)   236155_at (Human Genome U133 Plus 2.0 Array)   236243_at (Human Genome U133 Plus 2.0 Array)   238800_s_at (Human Genome U133 Plus 2.0 Array)   242776_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000365127
Ensembl peptide - ENSP00000365124
Ensembl peptide - ENSP00000365130
Ensembl peptide - ENSP00000277141
Ensembl peptide - ENSP00000365114
Ensembl peptide - ENSP00000365115
NCBI entrez gene - 79670     See in Manteia.
OMIM - 613467
RefSeq - XM_017015132
RefSeq - NM_001185059
RefSeq - NM_001185074
RefSeq - NM_024617
RefSeq - XM_006717283
RefSeq - XM_011519011
RefSeq - XM_011519012
RefSeq - XM_011519013
RefSeq - XM_011519014
RefSeq - XM_011519015
RefSeq - XM_011519016
RefSeq - XM_017015130
RefSeq - XM_017015131
RefSeq - XM_005252207
RefSeq - XM_005252208
RefSeq Peptide - NP_001171988
RefSeq Peptide - NP_001172003
RefSeq Peptide - NP_001317647
RefSeq Peptide - NP_078893
swissprot - Q5VYS8
swissprot - Q5VYS9
swissprot - Q5VYT0
swissprot - X6R3Q3
swissprot - A0A0C4DFW3
Ensembl - ENSG00000083223
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CABZ01032476.1ENSDARG00000074645Danio rerio
 ZCCHC6ENSGALG00000012607Gallus gallus
 Zcchc6ENSMUSG00000035248Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q5TAX3 / ZCCHC11 / zinc finger CCHC-type containing 11ENSG0000013474440
TUT1 / Q9H6E5 / terminal uridylyl transferase 1, U6 snRNA-specificENSG0000014901610
PAPD4 / Q6PIY7 / poly(A) RNA polymerase D4, non-canonicalENSG000001643299
AP002990.1ENSG000002555088
MTPAP / Q9NVV4 / mitochondrial poly(A) polymeraseENSG000001079517


Protein motifs (from Interpro)
Interpro ID Name
 IPR001878  Zinc finger, CCHC-type
 IPR002058  PAP/25A-associated
 IPR002934  Polymerase, nucleotidyl transferase domain
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR036236  Zinc finger C2H2 superfamily
 IPR036875  Zinc finger, CCHC-type superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000289 nuclear-transcribed mRNA poly(A) tail shortening TAS
 biological_processGO:0031123 RNA 3"-end processing IDA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0050265 RNA uridylyltransferase activity TAS


Pathways (from Reactome)
Pathway description
Deadenylation of mRNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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