ENSMUSG00000035248


Mus musculus

Features
Gene ID: ENSMUSG00000035248
  
Biological name :Zcchc6
  
Synonyms : Zcchc6 / zinc finger, CCHC domain containing 6
  
Possible biological names infered from orthology : Q5VYS8 / zinc finger CCHC-type containing 6
  
Species: Mus musculus
  
Chr. number: 13
Strand: -1
Band: B2
Gene start: 59771561
Gene end: 59823147
  
Corresponding Affymetrix probe sets: 10409804 (MoGene1.0st)   1433910_at (Mouse Genome 430 2.0 Array)   1441986_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000071623
Ensembl peptide - ENSMUSP00000153412
Ensembl peptide - ENSMUSP00000153376
Ensembl peptide - ENSMUSP00000153353
Ensembl peptide - ENSMUSP00000153310
Ensembl peptide - ENSMUSP00000153202
NCBI entrez gene - 214290     See in Manteia.
MGI - MGI:2387179
RefSeq - XM_017315481
RefSeq - XM_017315480
RefSeq - XM_011244510
RefSeq - XM_011244509
RefSeq - XM_011244508
RefSeq - NM_153538
RefSeq - XM_006517209
RefSeq - XM_006517208
RefSeq - XM_006517207
RefSeq Peptide - NP_705766
swissprot - E9PUA2
swissprot - A0A286YCY9
swissprot - A0A286YD79
swissprot - A0A286YDD7
swissprot - A0A286YDH2
swissprot - A0A286YDR9
Ensembl - ENSMUSG00000035248
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CABZ01032476.1ENSDARG00000074645Danio rerio
 ZCCHC6ENSGALG00000012607Gallus gallus
 Q5VYS8ENSG00000083223Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
B2RX14 / Zcchc11 / zinc finger, CCHC domain containing 11 / Q5TAX3* / zinc finger CCHC-type containing 11*ENSMUSG0000003461040
Papd4 / Q91YI6 / PAP associated domain containing 4 / Q6PIY7* / poly(A) RNA polymerase D4, non-canonical*ENSMUSG000000421679
Tut1 / Q8R3F9 / terminal uridylyl transferase 1, U6 snRNA-specific / Q9H6E5* / AP002990.1*ENSMUSG000000716459
Mtpap / Q9D0D3 / Poly(A) RNA polymerase, mitochondrial / Q9NVV4* / mitochondrial poly(A) polymerase*ENSMUSG000000242347


Protein motifs (from Interpro)
Interpro ID Name
 IPR001878  Zinc finger, CCHC-type
 IPR002058  PAP/25A-associated
 IPR002934  Polymerase, nucleotidyl transferase domain
 IPR036875  Zinc finger, CCHC-type superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0031123 RNA 3"-end processing IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA
 molecular_functionGO:0050265 RNA uridylyltransferase activity IEA


Pathways (from Reactome)
Pathway description
Deadenylation of mRNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr