ENSMUSG00000042167


Mus musculus

Features
Gene ID: ENSMUSG00000042167
  
Biological name :Papd4
  
Synonyms : PAP associated domain containing 4 / Papd4 / Q91YI6
  
Possible biological names infered from orthology : poly(A) RNA polymerase D4, non-canonical / Q6PIY7
  
Species: Mus musculus
  
Chr. number: 13
Strand: -1
Band: C3
Gene start: 93146282
Gene end: 93192385
  
Corresponding Affymetrix probe sets: 10411119 (MoGene1.0st)   10521966 (MoGene1.0st)   1419183_at (Mouse Genome 430 2.0 Array)   1433568_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000153060
Ensembl peptide - ENSMUSP00000153703
Ensembl peptide - ENSMUSP00000153685
Ensembl peptide - ENSMUSP00000153339
Ensembl peptide - ENSMUSP00000048124
NCBI entrez gene - 100715     See in Manteia.
MGI - MGI:2140950
RefSeq - XM_006517510
RefSeq - XM_017315331
RefSeq - XM_006517511
RefSeq - NM_133905
RefSeq Peptide - NP_598666
swissprot - Q91YI6
swissprot - A0A286YED5
swissprot - A0A286YCM6
swissprot - A0A286YDA7
Ensembl - ENSMUSG00000042167
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 papd4ENSDARG00000099679Danio rerio
 PAPD4ENSGALG00000014810Gallus gallus
 PAPD4ENSG00000164329Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
B2RX14 / Zcchc11 / zinc finger, CCHC domain containing 11 / Q5TAX3* / zinc finger CCHC-type containing 11*ENSMUSG0000003461029
Zcchc6 / zinc finger, CCHC domain containing 6 / Q5VYS8* / zinc finger CCHC-type containing 6*ENSMUSG0000003524828
Tut1 / Q8R3F9 / terminal uridylyl transferase 1, U6 snRNA-specific / Q9H6E5* / AP002990.1*ENSMUSG0000007164518
Mtpap / Q9D0D3 / Poly(A) RNA polymerase, mitochondrial / Q9NVV4* / mitochondrial poly(A) polymerase*ENSMUSG0000002423417


Protein motifs (from Interpro)
Interpro ID Name
 IPR002058  PAP/25A-associated


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002244 hematopoietic progenitor cell differentiation IMP
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0021766 hippocampus development IEA
 biological_processGO:0030182 neuron differentiation IEA
 biological_processGO:0043631 RNA polyadenylation IEA
 biological_processGO:0060041 retina development in camera-type eye IEA
 biological_processGO:0071044 histone mRNA catabolic process IEA
 biological_processGO:1990603 dark adaptation IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004652 polynucleotide adenylyltransferase activity ISO
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0005621 abnormal cell physiology "aberration in the vital processes of the cell " [Stedman s Medical Dictionary:ISBN 0-683-40008-8, hdene:Howard Dene , Mouse Genome Informatics Curator]
Show

Allelic Composition: Bcl11btm1Avram/Bcl11btm1Avram,Tg(Cd4-cre)1Cwi/?,Tg(LCKprBCL2)36Sjk/?
Genetic Background: involves: 129 * C57BL/6 * DBA/2

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr