ENSGALG00000014280


Gallus gallus

Features
Gene ID: ENSGALG00000014280
  
Biological name :AICDA
  
Synonyms : activation induced cytidine deaminase / AICDA
  
Possible biological names infered from orthology : Q9GZX7 / Q9WVE0 / Single-stranded DNA cytosine deaminase
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 75956434
Gene end: 75960413
  
Corresponding Affymetrix probe sets: GgaAffx.9065.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000023051
NCBI entrez gene - 418257     See in Manteia.
RefSeq - NM_001243222
RefSeq Peptide - NP_001230151
swissprot - E1BVI0
Ensembl - ENSGALG00000014280
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 aicdaENSDARG00000015734Danio rerio
 AICDAENSG00000111732Homo sapiens
 AicdaENSMUSG00000040627Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
APOBEC2 / apolipoprotein B mRNA editing enzyme catalytic subunit 2 / Q9WV35* / Q9Y235* / apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2*ENSGALG0000000322631


Protein motifs (from Interpro)
Interpro ID Name
 IPR002125  Cytidine and deoxycytidylate deaminase domain
 IPR013158  APOBEC-like, N-terminal
 IPR016192  APOBEC/CMP deaminase, zinc-binding
 IPR016193  Cytidine deaminase-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009972 cytidine deamination IEA
 biological_processGO:0016445 somatic diversification of immunoglobulins IEA
 biological_processGO:0016446 somatic hypermutation of immunoglobulin genes IEA
 biological_processGO:0042742 defense response to bacterium IEA
 biological_processGO:0045190 isotype switching IEA
 biological_processGO:0071222 cellular response to lipopolysaccharide IEA
 biological_processGO:0080111 DNA demethylation IEA
 biological_processGO:0090310 negative regulation of methylation-dependent chromatin silencing IEA
 biological_processGO:0097752 regulation of DNA stability IEA
 cellular_componentGO:0000178 exosome (RNase complex) IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004126 cytidine deaminase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEA
 molecular_functionGO:0031625 ubiquitin protein ligase binding IEA
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr