ENSGALG00000003226


Gallus gallus

Features
Gene ID: ENSGALG00000003226
  
Biological name :APOBEC2
  
Synonyms : APOBEC2 / apolipoprotein B mRNA editing enzyme catalytic subunit 2
  
Possible biological names infered from orthology : apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2 / Q9WV35 / Q9Y235
  
Species: Gallus gallus
  
Chr. number: 26
Strand: 1
Band:
Gene start: 4710936
Gene end: 4718644
  
Corresponding Affymetrix probe sets: Gga.12112.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000005099
NCBI entrez gene - 419915     See in Manteia.
RefSeq - XM_418038
swissprot - F1NNK5
Ensembl - ENSGALG00000003226
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 apobec2aENSDARG00000018881Danio rerio
 apobec2bENSDARG00000113992Danio rerio
 Q9Y235ENSG00000124701Homo sapiens
 Q9WV35ENSMUSG00000040694Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AICDA / activation induced cytidine deaminase / Q9GZX7* / Q9WVE0* / Single-stranded DNA cytosine deaminase *ENSGALG0000001428027


Protein motifs (from Interpro)
Interpro ID Name
 IPR002125  Cytidine and deoxycytidylate deaminase domain
 IPR013158  APOBEC-like, N-terminal
 IPR016193  Cytidine deaminase-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009972 cytidine deamination IEA
 biological_processGO:0016554 cytidine to uridine editing IEA
 biological_processGO:0016556 mRNA modification IEA
 biological_processGO:0080111 DNA demethylation IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004126 cytidine deaminase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEA
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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