ENSGALG00000015082


Gallus gallus

Features
Gene ID: ENSGALG00000015082
  
Biological name :RPS6
  
Synonyms : 40S ribosomal protein S6 / RPS6
  
Possible biological names infered from orthology : P62753 / P62754 / ribosomal protein S6
  
Species: Gallus gallus
  
Chr. number: Z
Strand: -1
Band:
Gene start: 33736457
Gene end: 33741021
  
Corresponding Affymetrix probe sets: Gga.4389.1.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000024283
Ensembl peptide - ENSGALP00000063327
Ensembl peptide - ENSGALP00000063107
Ensembl peptide - ENSGALP00000061555
Ensembl peptide - ENSGALP00000058823
NCBI entrez gene - 396148     See in Manteia.
RefSeq - NM_205225
RefSeq Peptide - NP_990556
swissprot - A0A1L1RRX1
swissprot - A0A1L1RWW0
swissprot - F7BYQ2
swissprot - A0A1L1RJ94
swissprot - A0A1L1RW93
Ensembl - ENSGALG00000015082
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rps6ENSDARG00000019778Danio rerio
 RPS6ENSG00000137154Homo sapiens
 Rps6ENSMUSG00000028495Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001377  Ribosomal protein S6e
 IPR014401  Ribosomal protein S6, eukaryotic
 IPR018282  Ribosomal protein S6e, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000082 G1/S transition of mitotic cell cycle IEA
 biological_processGO:0000278 mitotic cell cycle IEA
 biological_processGO:0001890 placenta development IEA
 biological_processGO:0002309 T cell proliferation involved in immune response IEA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0006412 translation IEA
 biological_processGO:0006924 activation-induced cell death of T cells IEA
 biological_processGO:0007093 mitotic cell cycle checkpoint IEA
 biological_processGO:0007369 gastrulation IEA
 biological_processGO:0022605 mammalian oogenesis stage IEA
 biological_processGO:0031929 TOR signaling IEA
 biological_processGO:0033077 T cell differentiation in thymus IEA
 biological_processGO:0042274 ribosomal small subunit biogenesis IEA
 biological_processGO:0042593 glucose homeostasis IEA
 biological_processGO:0043065 positive regulation of apoptotic process IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0048821 erythrocyte development IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0005844 polysome IEA
 cellular_componentGO:0015935 small ribosomal subunit IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IEA
 cellular_componentGO:0044297 cell body IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0003735 structural constituent of ribosome IEA
 molecular_functionGO:0019901 protein kinase binding IEA


Pathways (from Reactome)
Pathway description
mTORC1-mediated signalling
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr