ENSGALG00000015145


Gallus gallus

Features
Gene ID: ENSGALG00000015145
  
Biological name :TMC1
  
Synonyms : TMC1 / transmembrane channel-like protein 1
  
Possible biological names infered from orthology : Q8R4P5 / Q8TDI8 / transmembrane channel like 1
  
Species: Gallus gallus
  
Chr. number: Z
Strand: 1
Band:
Gene start: 35808066
Gene end: 35867542
  
Corresponding Affymetrix probe sets: GgaAffx.9631.1.S1_at (Chicken Array)   GgaAffx.9631.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000024394
Ensembl peptide - ENSGALP00000042761
NCBI entrez gene - 427255     See in Manteia.
RefSeq - XM_015280294
RefSeq - NM_001006580
RefSeq - XM_015280292
RefSeq - XM_015280293
RefSeq Peptide - NP_001006580
swissprot - F1NJC8
swissprot - R4GKQ5
Ensembl - ENSGALG00000015145
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tmc1ENSDARG00000056386Danio rerio
 TMC1ENSG00000165091Homo sapiens
 Tmc1ENSMUSG00000024749Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TMC2 / transmembrane channel-like protein 2 / Q8R4P4* / Q8TDI7* / transmembrane channel like 2*ENSGALG0000004270659
TMC3 / transmembrane channel-like protein 3 / Q7Z5M5* / transmembrane channel like 3*ENSGALG0000000637636
TMC7 / transmembrane channel like 7 / Q7Z402* / Q8C428* / Transmembrane channel-like protein 7 *ENSGALG0000000688918
TMC5 / transmembrane channel like 5 / Q32NZ6* / Q6UXY8* / Transmembrane channel-like protein 5 *ENSGALG0000000691117
TMC6 / transmembrane channel like 6 / Q7TN60* / Q7Z403* / transmembrane channel-like gene family 6*ENSGALG0000003887516


Protein motifs (from Interpro)
Interpro ID Name
 IPR012496  TMC domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0050910 detection of mechanical stimulus involved in sensory perception of sound IEA
 biological_processGO:0060005 vestibular reflex IEA
 biological_processGO:0060117 auditory receptor cell development IEA
 biological_processGO:0070588 calcium ion transmembrane transport IEA
 biological_processGO:1903169 regulation of calcium ion transmembrane transport IEA
 cellular_componentGO:0009897 external side of plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0032426 stereocilium tip IEA
 molecular_functionGO:0005245 voltage-gated calcium channel activity IEA
 molecular_functionGO:0008381 mechanosensitive ion channel activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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