ENSGALG00000038875


Gallus gallus

Features
Gene ID: ENSGALG00000038875
  
Biological name :TMC6
  
Synonyms : TMC6 / transmembrane channel like 6
  
Possible biological names infered from orthology : Q7TN60 / Q7Z403 / transmembrane channel-like gene family 6
  
Species: Gallus gallus
  
Chr. number: 18
Strand: 1
Band:
Gene start: 9959993
Gene end: 9965098
  
Corresponding Affymetrix probe sets: GgaAffx.4503.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000047210
NCBI entrez gene - 422089     See in Manteia.
RefSeq - XM_015295552
RefSeq - XM_015295555
RefSeq - XM_015295553
RefSeq - XM_015295554
swissprot - A0A1D5P3F5
Ensembl - ENSGALG00000038875
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tmc6aENSDARG00000069787Danio rerio
 TMC6ENSG00000141524Homo sapiens
 Tmc6ENSMUSG00000025572Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TMC5 / transmembrane channel like 5 / Q32NZ6* / Q6UXY8* / Transmembrane channel-like protein 5 *ENSGALG0000000691131
TMC7 / transmembrane channel like 7 / Q7Z402* / Q8C428* / Transmembrane channel-like protein 7 *ENSGALG0000000688919
TMC3 / transmembrane channel-like protein 3 / Q7Z5M5* / transmembrane channel like 3*ENSGALG0000000637619
TMC2 / transmembrane channel-like protein 2 / Q8R4P4* / Q8TDI7* / transmembrane channel like 2*ENSGALG0000004270617
TMC1 / transmembrane channel-like protein 1 / Q8R4P5* / Q8TDI8* / transmembrane channel like 1*ENSGALG0000001514517


Protein motifs (from Interpro)
Interpro ID Name
 IPR012496  TMC domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031965 nuclear membrane IEA


Pathways (from Reactome)
Pathway description
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr