ENSGALG00000015163


Gallus gallus

Features
Gene ID: ENSGALG00000015163
  
Biological name :RNF138
  
Synonyms : ring finger protein 138 / RNF138
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase RNF138 / Q8WVD3 / Q9CQE0 / ring finger protein 138, retrogene 1 / Rnf138rt1
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 106683225
Gene end: 106690418
  
Corresponding Affymetrix probe sets: Gga.10774.1.A1_at (Chicken Array)   Gga.10774.1.S1_at (Chicken Array)   Gga.12610.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000035999
NCBI entrez gene - 421096     See in Manteia.
RefSeq - XM_015282603
RefSeq - XM_015282604
RefSeq - XM_015282605
RefSeq - XM_015282606
RefSeq - XM_419180
RefSeq - XM_015282602
swissprot - F1NC08
Ensembl - ENSGALG00000015163
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q8WVD3ENSG00000134758Homo sapiens
 Q9CQE0ENSMUSG00000024317Mus musculus
 Rnf138rt1ENSMUSG00000083695Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RNF166 / RING finger protein 166 / Q3U9F6* / Q96A37*ENSGALG0000000727230
RNF114 / E3 ubiquitin-protein ligase RNF114 / Q9ET26* / Q9Y508* / ring finger protein 114*ENSGALG0000000802128


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR008598  Drought induced 19 protein type, zinc-binding domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IBA
 biological_processGO:0000724 double-strand break repair via homologous recombination IEA
 biological_processGO:0010792 DNA double-strand break processing involved in repair via single-strand annealing IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0035861 site of double-strand break IEA
 molecular_functionGO:0003697 single-stranded DNA binding IEA
 molecular_functionGO:0019901 protein kinase binding IEA
 molecular_functionGO:0031624 ubiquitin conjugating enzyme binding IBA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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