ENSMUSG00000024317


Mus musculus

Features
Gene ID: ENSMUSG00000024317
  
Biological name :Rnf138
  
Synonyms : E3 ubiquitin-protein ligase RNF138 / Q9CQE0 / Rnf138
  
Possible biological names infered from orthology : Q8WVD3 / ring finger protein 138
  
Species: Mus musculus
  
Chr. number: 18
Strand: 1
Band: A2
Gene start: 21001341
Gene end: 21028223
  
Corresponding Affymetrix probe sets: 10454202 (MoGene1.0st)   1419368_a_at (Mouse Genome 430 2.0 Array)   1419369_at (Mouse Genome 430 2.0 Array)   1454064_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000072626
Ensembl peptide - ENSMUSP00000056641
NCBI entrez gene - 56515     See in Manteia.
MGI - MGI:1929211
RefSeq - NM_207623
RefSeq - XM_011246975
RefSeq - NM_001303005
RefSeq - NM_001303011
RefSeq - NM_019706
RefSeq - XM_006526117
RefSeq - XM_006526118
RefSeq Peptide - NP_997506
RefSeq Peptide - NP_001289934
RefSeq Peptide - NP_001289940
RefSeq Peptide - NP_062680
swissprot - Q9CQE0
Ensembl - ENSMUSG00000024317
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNF138ENSGALG00000015163Gallus gallus
 Q8WVD3ENSG00000134758Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Rnf138rt1 / ring finger protein 138, retrogene 1ENSMUSG0000008369568
Q3U9F6 / Rnf166 / ring finger protein 166 / Q96A37*ENSMUSG0000001447029
Q9ET26 / Rnf114 / E3 ubiquitin-protein ligase RNF114 / Q9Y508* / ring finger protein 114*ENSMUSG0000000641828
Q9D9R0 / Rnf125 / E3 ubiquitin-protein ligase RNF125 / Q96EQ8* / ring finger protein 125*ENSMUSG0000003310716


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR008598  Drought induced 19 protein type, zinc-binding domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR034734  Zinc finger C2HC RNF-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IBA
 biological_processGO:0000724 double-strand break repair via homologous recombination IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0010792 DNA double-strand break processing involved in repair via single-strand annealing IEA
 biological_processGO:0016055 Wnt signaling pathway IEA
 biological_processGO:0016567 protein ubiquitination ISO
 biological_processGO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process IBA
 biological_processGO:1990830 cellular response to leukemia inhibitory factor IEP
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0035861 site of double-strand break IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0019901 protein kinase binding IEA
 molecular_functionGO:0031624 ubiquitin conjugating enzyme binding IBA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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