ENSGALG00000016424


Gallus gallus

Features
Gene ID: ENSGALG00000016424
  
Biological name :CPSF3
  
Synonyms : cleavage and polyadenylation specific factor 3 / CPSF3
  
Possible biological names infered from orthology : Cleavage and polyadenylation specificity factor subunit 3 / Q9QXK7 / Q9UKF6
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 96606819
Gene end: 96624780
  
Corresponding Affymetrix probe sets: Gga.10027.1.S1_at (Chicken Array)   Gga.10027.2.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000026443
Ensembl peptide - ENSGALP00000052112
NCBI entrez gene - 421929     See in Manteia.
RefSeq - XM_015276076
swissprot - A0A1D5PH35
swissprot - F1NKW5
Ensembl - ENSGALG00000016424
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cpsf3ENSDARG00000027649Danio rerio
 CPSF3ENSG00000119203Homo sapiens
 Cpsf3ENSMUSG00000054309Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
INTS11 / integrator complex subunit 11 / Q5TA45* / Q9CWS4*ENSGALG0000000169129


Protein motifs (from Interpro)
Interpro ID Name
 IPR001279  Metallo-beta-lactamase
 IPR011108  Zn-dependent metallo-hydrolase, RNA specificity domain
 IPR021718  Pre-mRNA 3"-end-processing endonuclease polyadenylation factor C-term
 IPR022712  Beta-Casp domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006398 mRNA 3"-end processing by stem-loop binding and cleavage IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 biological_processGO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEA
 cellular_componentGO:0005847 mRNA cleavage and polyadenylation specificity factor complex IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004521 endoribonuclease activity IEA
 molecular_functionGO:0008409 5"-3" exonuclease activity IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA 3-end processing
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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