ENSGALG00000016437


Gallus gallus

Features
Gene ID: ENSGALG00000016437
  
Biological name :TAF1B
  
Synonyms : Q5ZJR9 / TAF1B / TATA box-binding protein-associated factor RNA polymerase I subunit B
  
Possible biological names infered from orthology : P97358 / Q53T94 / TATA-box binding protein associated factor, RNA polymerase I, B
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 96811881
Gene end: 96856746
  
Corresponding Affymetrix probe sets: Gga.4059.1.S1_at (Chicken Array)   GgaAffx.12468.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000026465
Ensembl peptide - ENSGALP00000060576
Ensembl peptide - ENSGALP00000045926
NCBI entrez gene - 421933     See in Manteia.
RefSeq - NM_001006416
RefSeq - XM_015276038
RefSeq Peptide - NP_001006416
swissprot - J9PBQ3
swissprot - A0A1L1RP65
swissprot - Q5ZJR9
swissprot - A0A1D5NZV6
Ensembl - ENSGALG00000016437
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 taf1bENSDARG00000028937Danio rerio
 TAF1BENSG00000115750Homo sapiens
 Taf1bENSMUSG00000059669Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR021752  Transcription initiation factor Rrn7, Zinc-finger
 IPR033599  RNA polymerase I transcription initiation factor TAF1B/Rrn7


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001188 RNA polymerase I transcriptional preinitiation complex assembly IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006360 transcription by RNA polymerase I IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005668 RNA polymerase transcription factor SL1 complex IBA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0070860 RNA polymerase I core factor complex IEA
 molecular_functionGO:0001164 RNA polymerase I CORE element sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
B-WICH complex positively regulates rRNA expression
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase I Transcription Termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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