ENSMUSG00000059669


Mus musculus

Features
Gene ID: ENSMUSG00000059669
  
Biological name :Taf1b
  
Synonyms : P97358 / Taf1b / TATA-box binding protein associated factor, RNA polymerase I, B
  
Possible biological names infered from orthology : Q53T94 / TATA-box binding protein associated factor, RNA polymerase I subunit B
  
Species: Mus musculus
  
Chr. number: 12
Strand: 1
Band: A1.3
Gene start: 24498359
Gene end: 24558539
  
Corresponding Affymetrix probe sets: 10394942 (MoGene1.0st)   1431345_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000152701
Ensembl peptide - ENSMUSP00000152862
Ensembl peptide - ENSMUSP00000075339
NCBI entrez gene - 21340     See in Manteia.
MGI - MGI:109577
RefSeq - NM_020614
RefSeq Peptide - NP_065639
swissprot - A0A1Y7VK37
swissprot - P97358
Ensembl - ENSMUSG00000059669
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 taf1bENSDARG00000028937Danio rerio
 TAF1BENSGALG00000016437Gallus gallus
 TAF1BENSG00000115750Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR021752  Transcription initiation factor Rrn7, Zinc-finger
 IPR033599  RNA polymerase I transcription initiation factor TAF1B/Rrn7


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001188 RNA polymerase I transcriptional preinitiation complex assembly IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006360 transcription by RNA polymerase I IEA
 cellular_componentGO:0000120 RNA polymerase I transcription factor complex TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005668 RNA polymerase transcription factor SL1 complex IBA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0070860 RNA polymerase I core factor complex IEA
 molecular_functionGO:0001164 RNA polymerase I CORE element sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
B-WICH complex positively regulates rRNA expression
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase I Transcription Termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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