ENSGALG00000016698


Gallus gallus

Features
Gene ID: ENSGALG00000016698
  
Biological name :SHOX
  
Synonyms : short stature homeobox / SHOX
  
Possible biological names infered from orthology : O15266
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 129773258
Gene end: 129781085
  
Corresponding Affymetrix probe sets: GgaAffx.25035.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000026898
NCBI entrez gene - 418669     See in Manteia.
RefSeq - NM_001079724
RefSeq Peptide - NP_001073192
swissprot - Q00G66
Ensembl - ENSGALG00000016698
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 shoxENSDARG00000025891Danio rerio
 SHOXENSG00000185960Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ENSGALG0000003972867
OTP / orthopedia homeobox / O09113* / Q5XKR4* / Homeobox protein orthopedia *ENSGALG0000002674423


Protein motifs (from Interpro)
Interpro ID Name
 IPR000047  Helix-turn-helix motif
 IPR001356  Homeobox domain
 IPR003654  OAR domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr