ENSDARG00000025891


Danio rerio

Features
Gene ID: ENSDARG00000025891
  
Biological name :shox
  
Synonyms : short stature homeobox / shox
  
Possible biological names infered from orthology : O15266
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 34641237
Gene end: 34647695
  
Corresponding Affymetrix probe sets: Dr.22681.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000113855
NCBI entrez gene - 664748     See in Manteia.
RefSeq - NM_001126411
RefSeq Peptide - NP_001119883
swissprot - B0S5T0
ZFIN ID - ZDB-GENE-051030-21
Ensembl - ENSDARG00000025891
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SHOXENSGALG00000016698Gallus gallus
 SHOXENSG00000185960Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
shox2 / short stature homeobox 2 / O60902* / P70390*ENSDARG0000007571364
otpa / orthopedia homeobox a / OTP* / Q5XKR4* / orthopedia homeobox*ENSDARG0000001420124
otpb / Q6DGH9 / orthopedia homeobox b / OTP* / O09113* / Q5XKR4* / orthopedia homeobox* / Homeobox protein orthopedia *ENSDARG0000005837924


Protein motifs (from Interpro)
Interpro ID Name
 IPR000047  Helix-turn-helix motif
 IPR001356  Homeobox domain
 IPR003654  OAR domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001503 ossification IMP
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0030282 bone mineralization IMP
 biological_processGO:0033339 pectoral fin development IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000155 somite somite immature , abnormal
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 ZFA:0000250 opercle opercle bone mineralization decreased process quality , abnormal
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 ZFA:0000476 branchiostegal ray branchiostegal ray bone mineralization decreased process quality , abnormal
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 ZFA:0000578 ceratohyal bone ceratohyal bone bone mineralization decreased process quality , abnormal
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 ZFA:0000621 quadrate quadrate bone mineralization decreased process quality , abnormal
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 ZFA:0000672 hyomandibula hyomandibula bone mineralization decreased process quality , abnormal
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 ZFA:0001094 whole organism whole organism anterior-posterior axis decreased length , abnormal
whole organism decreased amount , abnormal
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 ZFA:0001161 pectoral fin pectoral fin decreased size , abnormal
pectoral fin chondrocyte decreased amount , abnormal
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 ZFA:0001189 vertebra vertebra bone mineralization decreased process quality , abnormal
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 ZFA:0005606 cranial vault cranial vault bone mineralization decreased process quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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