ENSDARG00000014201


Danio rerio

Features
Gene ID: ENSDARG00000014201
  
Biological name :otpa
  
Synonyms : orthopedia homeobox a / otpa
  
Possible biological names infered from orthology : Homeobox protein orthopedia / O09113 / orthopedia homeobox / OTP / Q5XKR4
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 7582036
Gene end: 7586992
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000015517
Ensembl peptide - ENSDARP00000122571
NCBI entrez gene - 560759     See in Manteia.
RefSeq - NM_001128703
RefSeq Peptide - NP_001122175
swissprot - E9QGH0
swissprot - B3DGA5
ZFIN ID - ZDB-GENE-070216-1
Ensembl - ENSDARG00000014201
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 OTPENSGALG00000026744Gallus gallus
 OTPENSG00000171540Homo sapiens
 OtpENSMUSG00000021685Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
otpb / Q6DGH9 / orthopedia homeobox b / OTP* / O09113* / Q5XKR4* / orthopedia homeobox* / Homeobox protein orthopedia *ENSDARG0000005837983
shox2 / short stature homeobox 2 / O60902* / P70390*ENSDARG0000007571321
shox / short stature homeobox / O15266*ENSDARG0000002589120


Protein motifs (from Interpro)
Interpro ID Name
 IPR000047  Helix-turn-helix motif
 IPR001356  Homeobox domain
 IPR003654  OAR domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007632 visual behavior IMP
 biological_processGO:0021522 spinal cord motor neuron differentiation IMP
 biological_processGO:0021767 mammillary body development IGI
 biological_processGO:0021884 forebrain neuron development IMP
 biological_processGO:0030182 neuron differentiation IMP
 biological_processGO:0035176 social behavior IMP
 biological_processGO:0071542 dopaminergic neuron differentiation IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000032 hypothalamus hypothalamus dopaminergic neuron decreased amount , abnormal
Show

 ZFA:0000075 spinal cord spinal cord motor neuron decreased amount , abnormal
Show

 ZFA:0000470 preoptic area preoptic area neurosecretory neuron increased amount , abnormal
preoptic area neurosecretory neuron increased distribution , abnormal
Show

 ZFA:0000633 caudal tuberculum caudal tuberculum increased amount , abnormal
caudal tuberculum dopaminergic neuron decreased amount , abnormal
caudal tuberculum decreased distribution , abnormal
caudal tuberculum decreased amount , abnormal
Show

 ZFA:0009301 dopaminergic neuron dopaminergic neuron decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr