ENSGALG00000019355


Gallus gallus

Features
Gene ID: ENSGALG00000019355
  
Biological name :CPSF6
  
Synonyms : cleavage and polyadenylation specific factor 6 / CPSF6
  
Possible biological names infered from orthology : Cleavage and polyadenylation specificity factor subunit 6 / Q16630 / Q6NVF9
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 35386197
Gene end: 35411271
  
Corresponding Affymetrix probe sets: GgaAffx.12003.1.S1_at (Chicken Array)   GgaAffx.6255.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000016173
Ensembl peptide - ENSGALP00000061811
Ensembl peptide - ENSGALP00000061795
Ensembl peptide - ENSGALP00000061734
Ensembl peptide - ENSGALP00000049306
NCBI entrez gene - 417844     See in Manteia.
RefSeq - XM_015281739
RefSeq - NM_001039271
RefSeq - XM_015281724
RefSeq - XM_015281728
RefSeq - XM_015281733
RefSeq Peptide - NP_001034360
swissprot - A0A1L1RSM8
swissprot - A0A1L1RSM0
swissprot - A0A1L1RSF9
swissprot - A0A1D5P9A5
swissprot - F1NGU9
Ensembl - ENSGALG00000019355
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cpsf6ENSDARG00000018618Danio rerio
 CPSF6ENSG00000111605Homo sapiens
 Cpsf6ENSMUSG00000055531Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CPSF7* / Q8BTV2* / Q8N684* / cleavage and polyadenylation specific factor 7* / Cleavage and polyadenylation specificity factor subunit 7 *ENSGALG0000004096216
CPSF7* / Q8BTV2* / Q8N684* / cleavage and polyadenylation specific factor 7* / Cleavage and polyadenylation specificity factor subunit 7 *ENSGALG000000390149


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006378 mRNA polyadenylation IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0046833 positive regulation of RNA export from nucleus IEA
 biological_processGO:0051262 protein tetramerization IEA
 biological_processGO:0051290 protein heterotetramerization IEA
 biological_processGO:0098789 pre-mRNA cleavage required for polyadenylation IEA
 biological_processGO:1990120 messenger ribonucleoprotein complex assembly IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005726 perichromatin fibrils IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005847 mRNA cleavage and polyadenylation specificity factor complex IEA
 cellular_componentGO:0005849 mRNA cleavage factor complex IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0035061 interchromatin granule IEA
 cellular_componentGO:0042382 paraspeckles IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0043023 ribosomal large subunit binding IEA
 molecular_functionGO:1990448 exon-exon junction complex binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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