ENSMUSG00000055531


Mus musculus

Features
Gene ID: ENSMUSG00000055531
  
Biological name :Cpsf6
  
Synonyms : Cleavage and polyadenylation specificity factor subunit 6 / Cpsf6 / Q6NVF9
  
Possible biological names infered from orthology : cleavage and polyadenylation specific factor 6 / Q16630
  
Species: Mus musculus
  
Chr. number: 10
Strand: -1
Band: D2
Gene start: 117344673
Gene end: 117380015
  
Corresponding Affymetrix probe sets: 10372656 (MoGene1.0st)   1428231_at (Mouse Genome 430 2.0 Array)   1428232_at (Mouse Genome 430 2.0 Array)   1428233_at (Mouse Genome 430 2.0 Array)   1428234_at (Mouse Genome 430 2.0 Array)   1437372_at (Mouse Genome 430 2.0 Array)   1439188_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000135848
Ensembl peptide - ENSMUSP00000068408
Ensembl peptide - ENSMUSP00000134823
Ensembl peptide - ENSMUSP00000135136
Ensembl peptide - ENSMUSP00000135150
Ensembl peptide - ENSMUSP00000135550
Ensembl peptide - ENSMUSP00000135840
NCBI entrez gene - 432508     See in Manteia.
MGI - MGI:1913948
RefSeq - XM_006513852
RefSeq - XM_006513851
RefSeq - XM_006513856
RefSeq - XM_006513855
RefSeq - XM_006513854
RefSeq - NM_001013391
RefSeq - NM_001310609
RefSeq - XM_006513858
RefSeq - XM_006513853
RefSeq Peptide - NP_001297538
RefSeq Peptide - NP_001013409
swissprot - Q6NVF9
swissprot - H3BJW3
swissprot - H3BJ30
swissprot - H3BLM9
swissprot - H3BLM1
swissprot - H3BKW0
Ensembl - ENSMUSG00000055531
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cpsf6ENSDARG00000018618Danio rerio
 CPSF6ENSGALG00000019355Gallus gallus
 CPSF6ENSG00000111605Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Cpsf7 / Q8BTV2 / Cleavage and polyadenylation specificity factor subunit 7 / Q8N684* / cleavage and polyadenylation specific factor 7*ENSMUSG0000003482045


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034769  Cleavage and polyadenylation specificity factor subunit 6
 IPR034772  CPSF6/7 family
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006378 mRNA polyadenylation ISS
 biological_processGO:0006397 mRNA processing ISO
 biological_processGO:0046833 positive regulation of RNA export from nucleus ISS
 biological_processGO:0051262 protein tetramerization ISO
 biological_processGO:0051290 protein heterotetramerization ISS
 biological_processGO:0098789 pre-mRNA cleavage required for polyadenylation ISS
 biological_processGO:1990120 messenger ribonucleoprotein complex assembly ISS
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005654 nucleoplasm ISS
 cellular_componentGO:0005726 perichromatin fibrils ISS
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005847 mRNA cleavage and polyadenylation specificity factor complex IEA
 cellular_componentGO:0005849 mRNA cleavage factor complex IEA
 cellular_componentGO:0016607 nuclear speck ISO
 cellular_componentGO:0035061 interchromatin granule ISS
 cellular_componentGO:0042382 paraspeckles ISO
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding ISO
 molecular_functionGO:0003729 mRNA binding ISS
 molecular_functionGO:0043023 ribosomal large subunit binding ISS
 molecular_functionGO:1990448 exon-exon junction complex binding ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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