ENSMUSG00000034820


Mus musculus

Features
Gene ID: ENSMUSG00000034820
  
Biological name :Cpsf7
  
Synonyms : Cleavage and polyadenylation specificity factor subunit 7 / Cpsf7 / Q8BTV2
  
Possible biological names infered from orthology : cleavage and polyadenylation specific factor 7 / Q8N684
  
Species: Mus musculus
  
Chr. number: 19
Strand: 1
Band: A
Gene start: 10525244
Gene end: 10547735
  
Corresponding Affymetrix probe sets: 10461475 (MoGene1.0st)   10338176 (MoGene1.0st)   10338254 (MoGene1.0st)   10338789 (MoGene1.0st)   10338791 (MoGene1.0st)   10338972 (MoGene1.0st)   10339057 (MoGene1.0st)   10339419 (MoGene1.0st)   10341387 (MoGene1.0st)   10341591 (MoGene1.0st)   10342750 (MoGene1.0st)   10343284 (MoGene1.0st)   10343570 (MoGene1.0st)   1415730_at (Mouse Genome 430 2.0 Array)   1453356_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000038958
NCBI entrez gene - 269061     See in Manteia.
MGI - MGI:1917826
RefSeq - XM_017318215
RefSeq - NM_001164272
RefSeq - NM_172302
RefSeq - XM_006527120
RefSeq - XM_006527123
RefSeq - XM_017318214
RefSeq - XM_006527116
RefSeq - XM_006527117
RefSeq - XM_006527119
RefSeq Peptide - NP_758506
RefSeq Peptide - NP_001157744
swissprot - Q8BTV2
Ensembl - ENSMUSG00000034820
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000039014Gallus gallus
 ENSGALG00000040962Gallus gallus
 CPSF7ENSG00000149532Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Cpsf6 / Q6NVF9 / Cleavage and polyadenylation specificity factor subunit 6 / Q16630* / cleavage and polyadenylation specific factor 6*ENSMUSG0000005553152


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034770  Cleavage and polyadenylation specificity factor subunit 7
 IPR034772  CPSF6/7 family
 IPR034773  CPSF7, RNA recognition motif
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0051262 protein tetramerization IEA
 biological_processGO:0051290 protein heterotetramerization IEA
 biological_processGO:0098789 pre-mRNA cleavage required for polyadenylation IEA
 biological_processGO:1990120 messenger ribonucleoprotein complex assembly IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005847 mRNA cleavage and polyadenylation specificity factor complex IEA
 cellular_componentGO:0005849 mRNA cleavage factor complex ISO
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA 3-end processing
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000027079 Clp1 / Q99LI9 / Polyribonucleotide 5-hydroxyl-kinase Clp1 / Q92989* / cleavage and polyadenylation factor I subunit 1*  / complex
 ENSMUSG00000031754 Nudt21 / Q9CQF3 / nudix (nucleoside diphosphate linked moiety X)-type motif 21 / O43809* / nudix hydrolase 21*  / complex
 ENSMUSG00000041328 Pcf11 / PCF11 cleavage and polyadenylation factor subunit / O94913*  / complex






 

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