ENSMUSG00000041328


Mus musculus

Features
Gene ID: ENSMUSG00000041328
  
Biological name :Pcf11
  
Synonyms : Pcf11 / PCF11 cleavage and polyadenylation factor subunit
  
Possible biological names infered from orthology : O94913
  
Species: Mus musculus
  
Chr. number: 7
Strand: -1
Band: E1
Gene start: 92643543
Gene end: 92669934
  
Corresponding Affymetrix probe sets: 10565547 (MoGene1.0st)   1427159_at (Mouse Genome 430 2.0 Array)   1427160_at (Mouse Genome 430 2.0 Array)   1428724_at (Mouse Genome 430 2.0 Array)   1456489_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000113717
Ensembl peptide - ENSMUSP00000115278
Ensembl peptide - ENSMUSP00000146556
Ensembl peptide - ENSMUSP00000146885
NCBI entrez gene - 74737     See in Manteia.
MGI - MGI:1919579
RefSeq - XM_006508272
RefSeq - NM_029078
RefSeq Peptide - NP_083354
swissprot - F6UFZ5
swissprot - Q80V88
swissprot - G3X9Z4
Ensembl - ENSMUSG00000041328
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcf11ENSDARG00000044625Danio rerio
 ENSGALG00000017249Gallus gallus
 PCF11ENSG00000165494Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006569  CID domain
 IPR006903  RNA polymerase II-binding domain
 IPR008942  ENTH/VHS


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006369 termination of RNA polymerase II transcription IBA
 biological_processGO:0006378 mRNA polyadenylation IBA
 biological_processGO:0006379 mRNA cleavage IBA
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005739 mitochondrion ISO
 cellular_componentGO:0005849 mRNA cleavage factor complex IBA
 molecular_functionGO:0000993 RNA polymerase II core binding IBA
 molecular_functionGO:0003729 mRNA binding IBA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
RNA polymerase II transcribes snRNA genes
mRNA Splicing - Major Pathway
mRNA 3-end processing
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000027079 Clp1 / Q99LI9 / Polyribonucleotide 5-hydroxyl-kinase Clp1 / Q92989* / cleavage and polyadenylation factor I subunit 1*  / complex
 ENSMUSG00000034820 Cpsf7 / Q8BTV2 / Cleavage and polyadenylation specificity factor subunit 7 / Q8N684* / cleavage and polyadenylation specific factor 7*  / complex
 ENSMUSG00000031754 Nudt21 / Q9CQF3 / nudix (nucleoside diphosphate linked moiety X)-type motif 21 / O43809* / nudix hydrolase 21*  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr