ENSGALG00000017249


Gallus gallus

Features
Gene ID: ENSGALG00000017249
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : O94913 / PCF11 / PCF11 cleavage and polyadenylation factor subunit
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 189174545
Gene end: 189193836
  
Corresponding Affymetrix probe sets: Gga.10140.1.S1_at (Chicken Array)   Gga.10140.1.S1_s_at (Chicken Array)   Gga.9211.1.S1_a_at (Chicken Array)   Gga.9211.3.S1_at (Chicken Array)   GgaAffx.25215.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000027831
NCBI entrez gene - 419021     See in Manteia.
RefSeq - XM_004938891
RefSeq - XM_004938892
RefSeq - XM_004938893
swissprot - F1NVV0
Ensembl - ENSGALG00000017249
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcf11ENSDARG00000044625Danio rerio
 PCF11ENSG00000165494Homo sapiens
 Pcf11ENSMUSG00000041328Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006569  CID domain
 IPR006903  RNA polymerase II-binding domain
 IPR008942  ENTH/VHS


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006369 termination of RNA polymerase II transcription IBA
 biological_processGO:0006378 mRNA polyadenylation IBA
 biological_processGO:0006379 mRNA cleavage IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005849 mRNA cleavage factor complex IBA
 molecular_functionGO:0000993 RNA polymerase II core binding IBA
 molecular_functionGO:0003729 mRNA binding IBA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000003084 NUDT21 / nudix hydrolase 21 / O43809* / Q9CQF3* / nudix (nucleoside diphosphate linked moiety X)-type motif 21*  / complex
 ENSGALG00000007370 CLP1 / Q5ZJL4 / Polyribonucleotide 5-hydroxyl-kinase Clp1 / Q92989* / Q99LI9* / cleavage and polyadenylation factor I subunit 1*  / complex






 

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contact: otassy@igbmc.fr