ENSGALG00000003084


Gallus gallus

Features
Gene ID: ENSGALG00000003084
  
Biological name :NUDT21
  
Synonyms : nudix hydrolase 21 / NUDT21
  
Possible biological names infered from orthology : nudix (nucleoside diphosphate linked moiety X)-type motif 21 / O43809 / Q9CQF3
  
Species: Gallus gallus
  
Chr. number: 11
Strand: 1
Band:
Gene start: 2215971
Gene end: 2222614
  
Corresponding Affymetrix probe sets: Gga.5287.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000004866
NCBI entrez gene - 100858636     See in Manteia.
RefSeq - NM_001277674
RefSeq Peptide - NP_001264603
swissprot - E1C538
Ensembl - ENSGALG00000003084
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nudt21ENSDARG00000003153Danio rerio
 NUDT21ENSG00000167005Homo sapiens
 Nudt21ENSMUSG00000031754Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000086  NUDIX hydrolase domain
 IPR015797  NUDIX hydrolase-like domain superfamily
 IPR016706  Cleavage/polyadenylation specificity factor subunit 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006378 mRNA polyadenylation IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0010608 posttranscriptional regulation of gene expression IEA
 biological_processGO:0031439 positive regulation of mRNA cleavage IEA
 biological_processGO:0031442 positive regulation of mRNA 3"-end processing IEA
 biological_processGO:0051262 protein tetramerization IEA
 biological_processGO:0051290 protein heterotetramerization IEA
 biological_processGO:0098789 pre-mRNA cleavage required for polyadenylation IEA
 biological_processGO:1900365 positive regulation of mRNA polyadenylation IEA
 biological_processGO:1990120 messenger ribonucleoprotein complex assembly IEA
 biological_processGO:2000738 positive regulation of stem cell differentiation IEA
 biological_processGO:2000975 positive regulation of pro-B cell differentiation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005847 mRNA cleavage and polyadenylation specificity factor complex IEA
 cellular_componentGO:0005849 mRNA cleavage factor complex IEA
 cellular_componentGO:0016604 nuclear body IEA
 cellular_componentGO:0042382 paraspeckles IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0017091 AU-rich element binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0042826 histone deacetylase binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000017249 PCF11* / O94913* / PCF11 cleavage and polyadenylation factor subunit*  / complex
 ENSGALG00000007370 CLP1 / Q5ZJL4 / Polyribonucleotide 5-hydroxyl-kinase Clp1 / Q92989* / Q99LI9* / cleavage and polyadenylation factor I subunit 1*  / complex






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr