ENSGALG00000023089


Gallus gallus

Features
Gene ID: ENSGALG00000023089
  
Biological name :SSBP2
  
Synonyms : single stranded DNA binding protein 2 / SSBP2
  
Possible biological names infered from orthology : P81877 / Q9CYZ8
  
Species: Gallus gallus
  
Chr. number: Z
Strand: 1
Band:
Gene start: 63521716
Gene end: 63687448
  
Corresponding Affymetrix probe sets: Gga.7337.1.S1_at (Chicken Array)   Gga.7337.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000036860
Ensembl peptide - ENSGALP00000059360
Ensembl peptide - ENSGALP00000044441
NCBI entrez gene - 770958     See in Manteia.
RefSeq - XM_001234273
RefSeq - XM_004949458
swissprot - A0A1L1RKS4
swissprot - A0A1D5NVR5
swissprot - F1NTD5
Ensembl - ENSGALG00000023089
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:ch211-130m23.3ENSDARG00000057395Danio rerio
 ssbp2ENSDARG00000099727Danio rerio
 SSBP2ENSG00000145687Homo sapiens
 Ssbp2ENSMUSG00000003992Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SSBP3 / Q98948 / Single-stranded DNA-binding protein 3 / Q9BWW4* / Q9D032*ENSGALG0000001077481


Protein motifs (from Interpro)
Interpro ID Name
 IPR006594  LIS1 homology motif
 IPR008116  Sequence-specific single-strand DNA-binding protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003697 single-stranded DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr