ENSG00000145687


Homo sapiens

Features
Gene ID: ENSG00000145687
  
Biological name :SSBP2
  
Synonyms : P81877 / single stranded DNA binding protein 2 / SSBP2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q14.1
Gene start: 81413021
Gene end: 81751797
  
Corresponding Affymetrix probe sets: 1558604_a_at (Human Genome U133 Plus 2.0 Array)   203787_at (Human Genome U133 Plus 2.0 Array)   210829_s_at (Human Genome U133 Plus 2.0 Array)   238483_at (Human Genome U133 Plus 2.0 Array)   238484_s_at (Human Genome U133 Plus 2.0 Array)   238861_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000425146
Ensembl peptide - ENSP00000424657
Ensembl peptide - ENSP00000426183
Ensembl peptide - ENSP00000483921
Ensembl peptide - ENSP00000322977
Ensembl peptide - ENSP00000422756
Ensembl peptide - ENSP00000422961
Ensembl peptide - ENSP00000423969
Ensembl peptide - ENSP00000424561
NCBI entrez gene - 23635     See in Manteia.
OMIM - 607389
RefSeq - XM_017009310
RefSeq - NM_001256734
RefSeq - NM_001256735
RefSeq - NM_001256736
RefSeq - NM_012446
RefSeq - XM_011543297
RefSeq - XM_017009304
RefSeq - XM_017009305
RefSeq - XM_017009306
RefSeq - XM_017009307
RefSeq - XM_017009308
RefSeq - XM_017009309
RefSeq - NM_001256732
RefSeq - NM_001256733
RefSeq Peptide - NP_001243662
RefSeq Peptide - NP_001243663
RefSeq Peptide - NP_001243664
RefSeq Peptide - NP_001243665
RefSeq Peptide - NP_036578
RefSeq Peptide - NP_001243661
swissprot - H0Y9M5
swissprot - H0Y9V4
swissprot - D6RAC5
swissprot - P81877
swissprot - A0A087X159
Ensembl - ENSG00000145687
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:ch211-130m23.3ENSDARG00000057395Danio rerio
 ssbp2ENSDARG00000099727Danio rerio
 SSBP2ENSGALG00000023089Gallus gallus
 Ssbp2ENSMUSG00000003992Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SSBP3 / Q9BWW4 / single stranded DNA binding protein 3ENSG0000015721680
SSBP4 / Q9BWG4 / single stranded DNA binding protein 4ENSG0000013051170


Protein motifs (from Interpro)
Interpro ID Name
 IPR006594  LIS1 homology motif
 IPR008116  Sequence-specific single-strand DNA-binding protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated NAS
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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