ENSG00000130511


Homo sapiens

Features
Gene ID: ENSG00000130511
  
Biological name :SSBP4
  
Synonyms : Q9BWG4 / single stranded DNA binding protein 4 / SSBP4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: p13.11
Gene start: 18418864
Gene end: 18434562
  
Corresponding Affymetrix probe sets: 223226_x_at (Human Genome U133 Plus 2.0 Array)   229269_x_at (Human Genome U133 Plus 2.0 Array)   229270_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000486132
Ensembl peptide - ENSP00000476092
Ensembl peptide - ENSP00000476567
Ensembl peptide - ENSP00000252807
Ensembl peptide - ENSP00000270061
Ensembl peptide - ENSP00000472975
Ensembl peptide - ENSP00000475352
Ensembl peptide - ENSP00000475538
Ensembl peptide - ENSP00000475668
Ensembl peptide - ENSP00000476084
NCBI entrez gene - 170463     See in Manteia.
OMIM - 607391
RefSeq - XM_017026437
RefSeq - NM_001009998
RefSeq - NM_032627
RefSeq - XM_005259790
RefSeq - XM_006722665
RefSeq - XM_006722666
RefSeq - XM_006722668
RefSeq - XM_017026431
RefSeq - XM_017026432
RefSeq - XM_017026433
RefSeq - XM_017026434
RefSeq - XM_017026435
RefSeq - XM_017026436
RefSeq Peptide - NP_001009998
RefSeq Peptide - NP_116016
swissprot - Q9BWG4
swissprot - U3KPY3
swissprot - U3KQ46
swissprot - U3KQ98
swissprot - U3KQN6
swissprot - U3KQP2
swissprot - V9GYB2
swissprot - M0R338
Ensembl - ENSG00000130511
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ssbp4ENSDARG00000056483Danio rerio
 zgc:110158ENSDARG00000056490Danio rerio
 Ssbp4ENSMUSG00000070003Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SSBP3 / Q9BWW4 / single stranded DNA binding protein 3ENSG0000015721668
SSBP2 / P81877 / single stranded DNA binding protein 2ENSG0000014568767


Protein motifs (from Interpro)
Interpro ID Name
 IPR006594  LIS1 homology motif
 IPR008116  Sequence-specific single-strand DNA-binding protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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