ENSG00000157216


Homo sapiens

Features
Gene ID: ENSG00000157216
  
Biological name :SSBP3
  
Synonyms : Q9BWW4 / single stranded DNA binding protein 3 / SSBP3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p32.3
Gene start: 54225432
Gene end: 54413479
  
Corresponding Affymetrix probe sets: 217991_x_at (Human Genome U133 Plus 2.0 Array)   222482_at (Human Genome U133 Plus 2.0 Array)   223635_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000414361
Ensembl peptide - ENSP00000405880
Ensembl peptide - ENSP00000431654
Ensembl peptide - ENSP00000479674
Ensembl peptide - ENSP00000350067
Ensembl peptide - ENSP00000360370
Ensembl peptide - ENSP00000360371
NCBI entrez gene - 23648     See in Manteia.
OMIM - 607390
RefSeq - XM_017000899
RefSeq - NM_001009955
RefSeq - NM_018070
RefSeq - NM_145716
RefSeq - XM_006710545
RefSeq - XM_017000897
RefSeq - XM_017000898
RefSeq Peptide - NP_663768
RefSeq Peptide - NP_001009955
RefSeq Peptide - NP_060540
swissprot - Q9BWW4
swissprot - Q9NW25
swissprot - A0A087WVT6
swissprot - Q5T863
swissprot - E9PK49
Ensembl - ENSG00000157216
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ssbp3aENSDARG00000058237Danio rerio
 ssbp3bENSDARG00000030155Danio rerio
 SSBP3ENSGALG00000010774Gallus gallus
 Ssbp3ENSMUSG00000061887Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SSBP2 / P81877 / single stranded DNA binding protein 2ENSG0000014568776
SSBP4 / Q9BWG4 / single stranded DNA binding protein 4ENSG0000013051167


Protein motifs (from Interpro)
Interpro ID Name
 IPR006594  LIS1 homology motif
 IPR008116  Sequence-specific single-strand DNA-binding protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002244 hematopoietic progenitor cell differentiation IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0021501 prechordal plate formation IEA
 biological_processGO:0021547 midbrain-hindbrain boundary initiation IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 biological_processGO:0060322 head development IBA
 biological_processGO:0060323 head morphogenesis IEA
 biological_processGO:0065003 protein-containing complex assembly IEA
 biological_processGO:2000744 positive regulation of anterior head development IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0032991 protein-containing complex IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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