ENSDARG00000030155


Danio rerio

Features
Gene ID: ENSDARG00000030155
  
Biological name :ssbp3b
  
Synonyms : single stranded DNA binding protein 3b / ssbp3b
  
Possible biological names infered from orthology : Q9BWW4 / Q9D032 / single stranded DNA binding protein 3 / SSBP3
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 18010568
Gene end: 18036639
  
Corresponding Affymetrix probe sets: Dr.749.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000039886
Ensembl peptide - ENSDARP00000118530
Ensembl peptide - ENSDARP00000113829
Ensembl peptide - ENSDARP00000109873
NCBI entrez gene - 406759     See in Manteia.
RefSeq - NM_213450
RefSeq - XM_009303844
RefSeq Peptide - NP_998615
swissprot - Q6PGU6
swissprot - E9QIG1
swissprot - E9QI58
swissprot - D0EWT5
ZFIN ID - ZDB-GENE-040426-2801
Ensembl - ENSDARG00000030155
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SSBP3ENSGALG00000010774Gallus gallus
 SSBP3ENSG00000157216Homo sapiens
 Ssbp3ENSMUSG00000061887Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ssbp3a / single stranded DNA binding protein 3a / SSBP3* / Q9BWW4* / Q9D032* / single stranded DNA binding protein 3*ENSDARG0000005823777
ssbp4 / single stranded DNA binding protein 4 / Q9BWG4*ENSDARG0000005648375
zgc:110158 / SSBP4* / Q9BWG4* / single stranded DNA binding protein 4*ENSDARG0000005649075
ssbp2 / single-stranded DNA binding protein 2 / P81877* / Q9CYZ8*ENSDARG0000009972770
si:ch211-130m23.3 / SSBP2* / P81877* / Q9CYZ8* / single stranded DNA binding protein 2*ENSDARG0000005739570


Protein motifs (from Interpro)
Interpro ID Name
 IPR006594  LIS1 homology motif
 IPR008116  Sequence-specific single-strand DNA-binding protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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