ENSDARG00000057395


Danio rerio

Features
Gene ID: ENSDARG00000057395
  
Biological name :si:ch211-130m23.3
  
Synonyms : si:ch211-130m23.3
  
Possible biological names infered from orthology : P81877 / Q9CYZ8 / single stranded DNA binding protein 2 / SSBP2
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 46207017
Gene end: 46273938
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000074483
NCBI entrez gene - 558547     See in Manteia.
swissprot - A2BIP9
ZFIN ID - ZDB-GENE-060531-14
Ensembl - ENSDARG00000057395
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SSBP2ENSGALG00000023089Gallus gallus
 SSBP2ENSG00000145687Homo sapiens
 Ssbp2ENSMUSG00000003992Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ssbp2 / single-stranded DNA binding protein 2 / P81877* / Q9CYZ8*ENSDARG0000009972781
zgc:110158 / SSBP4* / Q9BWG4* / single stranded DNA binding protein 4*ENSDARG0000005649079
ssbp4 / single stranded DNA binding protein 4 / Q9BWG4*ENSDARG0000005648379
ssbp3a / single stranded DNA binding protein 3a / SSBP3* / Q9BWW4* / Q9D032* / single stranded DNA binding protein 3*ENSDARG0000005823773
ssbp3b / single stranded DNA binding protein 3b / SSBP3* / Q9BWW4* / Q9D032* / single stranded DNA binding protein 3*ENSDARG0000003015569


Protein motifs (from Interpro)
Interpro ID Name
 IPR006594  LIS1 homology motif
 IPR008116  Sequence-specific single-strand DNA-binding protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003697 single-stranded DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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