ENSDARG00000058237


Danio rerio

Features
Gene ID: ENSDARG00000058237
  
Biological name :ssbp3a
  
Synonyms : single stranded DNA binding protein 3a / ssbp3a
  
Possible biological names infered from orthology : Q9BWW4 / Q9D032 / single stranded DNA binding protein 3 / SSBP3
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 10934479
Gene end: 11027410
  
Corresponding Affymetrix probe sets: Dr.17206.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000146544
Ensembl peptide - ENSDARP00000149880
Ensembl peptide - ENSDARP00000075515
Ensembl peptide - ENSDARP00000088512
Ensembl peptide - ENSDARP00000124479
NCBI entrez gene - 100005603     See in Manteia.
swissprot - B3DJV4
swissprot - F1QSQ7
swissprot - F8W369
ZFIN ID - ZDB-GENE-070705-484
Ensembl - ENSDARG00000058237
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SSBP3ENSGALG00000010774Gallus gallus
 SSBP3ENSG00000157216Homo sapiens
 Ssbp3ENSMUSG00000061887Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zgc:110158 / SSBP4* / Q9BWG4* / single stranded DNA binding protein 4*ENSDARG0000005649076
ssbp4 / single stranded DNA binding protein 4 / Q9BWG4*ENSDARG0000005648376
ssbp3b / single stranded DNA binding protein 3b / SSBP3* / Q9BWW4* / Q9D032* / single stranded DNA binding protein 3*ENSDARG0000003015569
si:ch211-130m23.3 / SSBP2* / P81877* / Q9CYZ8* / single stranded DNA binding protein 2*ENSDARG0000005739566
ssbp2 / single-stranded DNA binding protein 2 / P81877* / Q9CYZ8*ENSDARG0000009972766


Protein motifs (from Interpro)
Interpro ID Name
 IPR006594  LIS1 homology motif
 IPR008116  Sequence-specific single-strand DNA-binding protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 biological_processGO:0048936 peripheral nervous system neuron axonogenesis IMP
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003697 single-stranded DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000295 trigeminal ganglion trigeminal ganglion axon decreased amount , abnormal
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 ZFA:0009150 Rohon-Beard neuron Rohon-Beard neuron axon decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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