ENSMUSG00000070003


Mus musculus

Features
Gene ID: ENSMUSG00000070003
  
Biological name :Ssbp4
  
Synonyms : single stranded DNA binding protein 4 / Ssbp4
  
Possible biological names infered from orthology : Q9BWG4
  
Species: Mus musculus
  
Chr. number: 8
Strand: -1
Band: B3.3
Gene start: 70597490
Gene end: 70608872
  
Corresponding Affymetrix probe sets: 10579313 (MoGene1.0st)   1449511_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000148255
Ensembl peptide - ENSMUSP00000059039
Ensembl peptide - ENSMUSP00000147589
Ensembl peptide - ENSMUSP00000147638
Ensembl peptide - ENSMUSP00000147704
NCBI entrez gene - 76900     See in Manteia.
MGI - MGI:1924150
RefSeq - XM_011242338
RefSeq - XM_006509792
RefSeq - XM_006509794
RefSeq - XM_006509795
RefSeq - XM_011242335
RefSeq - XM_011242336
RefSeq - XM_011242337
RefSeq - NM_133772
RefSeq - XM_006509784
RefSeq - XM_006509788
RefSeq - XM_006509790
RefSeq Peptide - NP_598533
swissprot - A0A1B0GT95
swissprot - A0A1B0GRX5
swissprot - A0A1B0GRS0
swissprot - A0A1B0GRM9
swissprot - Q3U4B1
Ensembl - ENSMUSG00000070003
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ssbp4ENSDARG00000056483Danio rerio
 zgc:110158ENSDARG00000056490Danio rerio
 SSBP4ENSG00000130511Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Ssbp2 / Q9CYZ8 / Single-stranded DNA-binding protein 2 / P81877*ENSMUSG0000000399270
Ssbp3 / Q9D032 / Single-stranded DNA-binding protein 3 / Q9BWW4*ENSMUSG0000006188769


Protein motifs (from Interpro)
Interpro ID Name
 IPR006594  LIS1 homology motif
 IPR008116  Sequence-specific single-strand DNA-binding protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003697 single-stranded DNA binding IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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