Manteia

ENSGALG00000028565

Gallus gallus

Features

Gene ID:	ENSGALG00000028565

Biological name :	PCDHGC3

Synonyms :	Gallus gallus protocadherin gamma subfamily A, 2 (PCDHGA2), mRNA. / PCDHGC3

Possible biological names infered from orthology :

Species:	Gallus gallus

Chr. number:	13
Strand:	1
Band:
Gene start:	1828640
Gene end:	1876670

Corresponding Affymetrix probe sets:	GgaAffx.20143.1.S1_s_at (Chicken Array) GgaAffx.25565.1.S1_at (Chicken Array)

Cross references:	Ensembl peptide - ENSGALP00000045818 Ensembl peptide - ENSGALP00000043201 Ensembl peptide - ENSGALP00000058258 Ensembl peptide - ENSGALP00000056635 Ensembl peptide - ENSGALP00000048699 NCBI entrez gene - 408051 See in Manteia. NCBI entrez gene - 431363 See in Manteia. RefSeq - NM_214674 RefSeq - NM_001245037 RefSeq Peptide - NP_001231966 RefSeq Peptide - NP_999839 swissprot - A0A1D5PZ50 swissprot - R4GLV8 swissprot - A0A1D5PUN1 swissprot - A0A1D5P7K8 swissprot - A0A1D5NZK0 Ensembl - ENSGALG00000028565

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name

Species

No match

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...	ENSGALG00000041601	38
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...	ENSGALG00000041947	38
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...	ENSGALG00000029700	38
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...	ENSGALG00000036159	37
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...	ENSGALG00000041692	36
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...	ENSGALG00000041306	36
Q9Y5E8* / PCDHB15* / protocadherin beta 15*	ENSGALG00000044463	35
PCDH17 / protocadherin 17 / O14917*	ENSGALG00000016941	33
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...	ENSGALG00000042230	32
PCDH18 / protocadherin 18 / Q8VHR0* / Q9HCL0*	ENSGALG00000009732	32
PCDH19 / protocadherin-19 precursor / Q80TF3* / Q8TAB3* / protocadherin 19*	ENSGALG00000006822	31
PCDH12 / protocadherin 12 / O55134* / Q9NPG4*	ENSGALG00000002544	30
PCDH8 / protocadherin-8 precursor / O95206* / Q7TSK3* / protocadherin 8*	ENSGALG00000036258	29

Protein motifs (from Interpro)

Interpro ID	Name
IPR002126	Cadherin
IPR013164	Cadherin, N-terminal
IPR015919	Cadherin-like
IPR020894	Cadherin conserved site
IPR030728	Protocadherin gamma-C3
IPR031904	Cadherin, C-terminal catenin-binding domain
IPR032455	Cadherin, cytoplasmic C-terminal domain

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0007155	cell adhesion	IEA
biological_process	GO:0007156	homophilic cell adhesion via plasma membrane adhesion molecules	IEA
biological_process	GO:0007267	cell-cell signaling	IBA
biological_process	GO:0007399	nervous system development	IBA
cellular_component	GO:0005886	plasma membrane	IEA
cellular_component	GO:0005887	integral component of plasma membrane	IBA
cellular_component	GO:0016020	membrane	IEA
cellular_component	GO:0016021	integral component of membrane	IEA
molecular_function	GO:0005509	calcium ion binding	IEA

Pathways (from Reactome)

Pathway description

No match

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr