ENSGALG00000002544


Gallus gallus

Features
Gene ID: ENSGALG00000002544
  
Biological name :PCDH12
  
Synonyms : PCDH12 / protocadherin 12
  
Possible biological names infered from orthology : O55134 / Q9NPG4
  
Species: Gallus gallus
  
Chr. number: 13
Strand: -1
Band:
Gene start: 2380544
Gene end: 2389689
  
Corresponding Affymetrix probe sets: GgaAffx.1676.2.S1_at (Chicken Array)   GgaAffx.1676.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000004006
NCBI entrez gene - 416191     See in Manteia.
RefSeq - XM_414518
swissprot - F1NI83
Ensembl - ENSGALG00000002544
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh12ENSDARG00000076594Danio rerio
 PCDH12ENSG00000113555Homo sapiens
 O55134ENSMUSG00000024440Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PCDH18 / protocadherin 18 / Q8VHR0* / Q9HCL0*ENSGALG0000000973234
PCDH17 / protocadherin 17 / O14917*ENSGALG0000001694130
PCDH19 / protocadherin-19 precursor / Q80TF3* / Q8TAB3* / protocadherin 19*ENSGALG0000000682229
PCDH8 / protocadherin-8 precursor / O95206* / Q7TSK3* / protocadherin 8*ENSGALG0000003625828
PCDHGC3 / Gallus gallus protocadherin gamma subfamily A, 2 (PCDHGA2), mRNA.ENSGALG0000002856525
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...ENSGALG0000004194724
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...ENSGALG0000002970024
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...ENSGALG0000004160124
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...ENSGALG0000003615923
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...ENSGALG0000004169223
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...ENSGALG0000004223022
O60330* / Q9Y5H3* / Q91XY4* / Q9Y5G5* / Q9Y5G6* / Q9Y5G7* / Q9Y5G8* / Q9Y5G9* / Q9Y5H0* / Q9Y5H1* / Q9Y5H2* / PCDHGA2* / PCDHGA8* / PCDHGA7* / PCDHGA6* / PCDHGA5* / PCDHGA4* / PCDHGA3* / PC...ENSGALG0000004130622
Q9Y5E8* / PCDHB15* / protocadherin beta 15*ENSGALG0000004446321


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030720  Protocadherin-12


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0005977 glycogen metabolic process IEA
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 biological_processGO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
 biological_processGO:0060711 labyrinthine layer development IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0005911 cell-cell junction IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr