ENSMUSG00000024440


Mus musculus

Features
Gene ID: ENSMUSG00000024440
  
Biological name :Pcdh12
  
Synonyms : O55134 / Pcdh12 / Protocadherin-12
  
Possible biological names infered from orthology : Q9NPG4
  
Species: Mus musculus
  
Chr. number: 18
Strand: -1
Band: B3
Gene start: 38267092
Gene end: 38284402
  
Corresponding Affymetrix probe sets: 10458540 (MoGene1.0st)   1437928_at (Mouse Genome 430 2.0 Array)   1440023_at (Mouse Genome 430 2.0 Array)   1450473_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000141907
Ensembl peptide - ENSMUSP00000025311
NCBI entrez gene - 53601     See in Manteia.
MGI - MGI:1855700
RefSeq - NM_017378
RefSeq Peptide - NP_059074
swissprot - A0JNZ2
swissprot - O55134
Ensembl - ENSMUSG00000024440
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh12ENSDARG00000076594Danio rerio
 PCDH12ENSGALG00000002544Gallus gallus
 PCDH12ENSG00000113555Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Pcdh18 / Q8VHR0 / Protocadherin 18 / Q9HCL0*ENSMUSG0000003789233
Pcdh17 / protocadherin 17 / O14917*ENSMUSG0000003556629
Pcdh19 / Q80TF3 / Protocadherin-19 / Q8TAB3*ENSMUSG0000005132328
Pcdh10 / protocadherin 10 / Q9P2E7*ENSMUSG0000004910026
Pcdh8 / Q7TSK3 / Protocadherin-8 / O95206*ENSMUSG0000003642225
Pcdhga5 / protocadherin gamma subfamily A, 5 / Q9Y5G8*ENSMUSG0000010356724
Pcdhga11 / protocadherin gamma subfamily A, 11 / Q9Y5H2*ENSMUSG0000010274223
Pcdhac2ENSMUSG0000010269723
Q91XY4 / Pcdhga4 / Protocadherin gamma-A4 / Q9Y5G9* / protocadherin gamma subfamily A, 4*ENSMUSG0000010367723
Pcdhga10 / protocadherin gamma subfamily A, 10 / Q9Y5H3*ENSMUSG0000010222223
Pcdhga7 / protocadherin gamma subfamily A, 7 / Q9Y5G6*ENSMUSG0000010347223
Pcdhga3 / protocadherin gamma subfamily A, 3 / Q9Y5H0*ENSMUSG0000010434622
Pcdhga8 / protocadherin gamma subfamily A, 8 / Q9Y5G5*ENSMUSG0000010389722
Pcdhga6 / protocadherin gamma subfamily A, 6 / Q9Y5G7*ENSMUSG0000010379322
Pcdha2 / protocadherin alpha 2ENSMUSG0000010414822
Pcdha3 / protocadherin alpha 3ENSMUSG0000010231221


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030720  Protocadherin-12


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0005977 glycogen metabolic process IMP
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IDA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 biological_processGO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IDA
 biological_processGO:0060711 labyrinthine layer development IMP
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0005911 cell-cell junction IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001303 abnormal lens morphology "malformed transparent structure of the eye responsible for focusing light rays" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:40203]
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Allelic Composition: Nxntm1a(EUCOMM)Wtsi/Nxntm1a(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Nxntm1a(EUCOMM)Wtsi/Bay

 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Htra2tm1Jdo/Htra2tm1Jdo,Diablotm1Mak/Diablotm1Mak
Genetic Background: involves: 129P/Ola * C57BL/6

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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