ENSMUSG00000103677


Mus musculus

Features
Gene ID: ENSMUSG00000103677
  
Biological name :Pcdhga4
  
Synonyms : Pcdhga4 / Protocadherin gamma-A4 / Q91XY4
  
Possible biological names infered from orthology : protocadherin gamma subfamily A, 4 / Q9Y5G9
  
Species: Mus musculus
  
Chr. number: 18
Strand: 1
Band: B3
Gene start: 37685210
Gene end: 37841873
  
Corresponding Affymetrix probe sets: 1423628_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000142140
Ensembl peptide - ENSMUSP00000141272
NCBI entrez gene - 93712     See in Manteia.
MGI - MGI:1935216
RefSeq - NM_033587
RefSeq Peptide - NP_291065
swissprot - A0A0A6YVU6
swissprot - Q91XY4
Ensembl - ENSMUSG00000103677
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh1g2ENSDARG00000101232Danio rerio
 pcdh1gb2ENSDARG00000101307Danio rerio
 pcdh1gb9ENSDARG00000088475Danio rerio
 pcdh2g5ENSDARG00000098788Danio rerio
 PCDHB15ENSDARG00000101338Danio rerio
 ENSGALG00000041306Gallus gallus
 ENSGALG00000042230Gallus gallus
 ENSGALG00000041692Gallus gallus
 ENSGALG00000036159Gallus gallus
 ENSGALG00000041947Gallus gallus
 ENSGALG00000041601Gallus gallus
 ENSGALG00000029700Gallus gallus
 Q9Y5G9ENSG00000262576Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Pcdhga3 / protocadherin gamma subfamily A, 3 / Q9Y5H0*ENSMUSG0000010434674
Pcdhga7 / protocadherin gamma subfamily A, 7 / Q9Y5G6*ENSMUSG0000010347272
Pcdhga10 / protocadherin gamma subfamily A, 10 / Q9Y5H3*ENSMUSG0000010222272
Pcdhga5 / protocadherin gamma subfamily A, 5 / Q9Y5G8*ENSMUSG0000010356771
Pcdhga8 / protocadherin gamma subfamily A, 8 / Q9Y5G5*ENSMUSG0000010389770
Pcdhga11 / protocadherin gamma subfamily A, 11 / Q9Y5H2*ENSMUSG0000010274269
Pcdhga6 / protocadherin gamma subfamily A, 6 / Q9Y5G7*ENSMUSG0000010379369
Pcdhac2ENSMUSG0000010269741
Pcdh10 / protocadherin 10 / Q9P2E7*ENSMUSG0000004910038
Pcdha3 / protocadherin alpha 3ENSMUSG0000010231236
Pcdha2 / protocadherin alpha 2ENSMUSG0000010414836
Pcdh17 / protocadherin 17 / O14917*ENSMUSG0000003556635
Pcdh19 / Q80TF3 / Protocadherin-19 / Q8TAB3*ENSMUSG0000005132332
Pcdh18 / Q8VHR0 / Protocadherin 18 / Q9HCL0*ENSMUSG0000003789231
Pcdh8 / Q7TSK3 / Protocadherin-8 / O95206*ENSMUSG0000003642229
O55134 / Pcdh12 / Protocadherin-12 / Q9NPG4*ENSMUSG0000002444029


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0007399 nervous system development IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr