ENSMUSG00000102697


Mus musculus

Features
Gene ID: ENSMUSG00000102697
  
Biological name :Pcdhac2
  
Synonyms : Pcdhac2
  
Possible biological names infered from orthology :
  
Species: Mus musculus
  
Chr. number: 18
Strand: 1
Band: B3
Gene start: 37143503
Gene end: 37187657
  
Corresponding Affymetrix probe sets: 1420798_s_at (Mouse Genome 430 2.0 Array)   1424341_s_at (Mouse Genome 430 2.0 Array)   1451769_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000039888
NCBI entrez gene - 353237     See in Manteia.
MGI - MGI:1891443
RefSeq - NM_001003672
RefSeq Peptide - NP_001003672
swissprot - Q91Y09
Ensembl - ENSMUSG00000102697
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Pcdha2 / protocadherin alpha 2ENSMUSG0000010414848
Pcdha3 / protocadherin alpha 3ENSMUSG0000010231247
Pcdhga10 / protocadherin gamma subfamily A, 10 / Q9Y5H3*ENSMUSG0000010222239
Q91XY4 / Pcdhga4 / Protocadherin gamma-A4 / Q9Y5G9* / protocadherin gamma subfamily A, 4*ENSMUSG0000010367738
Pcdhga7 / protocadherin gamma subfamily A, 7 / Q9Y5G6*ENSMUSG0000010347238
Pcdh10 / protocadherin 10 / Q9P2E7*ENSMUSG0000004910037
Pcdhga11 / protocadherin gamma subfamily A, 11 / Q9Y5H2*ENSMUSG0000010274237
Pcdhga6 / protocadherin gamma subfamily A, 6 / Q9Y5G7*ENSMUSG0000010379337
Pcdhga5 / protocadherin gamma subfamily A, 5 / Q9Y5G8*ENSMUSG0000010356737
Pcdhga8 / protocadherin gamma subfamily A, 8 / Q9Y5G5*ENSMUSG0000010389737
Pcdhga3 / protocadherin gamma subfamily A, 3 / Q9Y5H0*ENSMUSG0000010434636
Pcdh17 / protocadherin 17 / O14917*ENSMUSG0000003556634
Pcdh19 / Q80TF3 / Protocadherin-19 / Q8TAB3*ENSMUSG0000005132331
Pcdh8 / Q7TSK3 / Protocadherin-8 / O95206*ENSMUSG0000003642229
Pcdh18 / Q8VHR0 / Protocadherin 18 / Q9HCL0*ENSMUSG0000003789228
O55134 / Pcdh12 / Protocadherin-12 / Q9NPG4*ENSMUSG0000002444027


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030726  Protocadherin alpha-C2
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: a1R/a1R
Genetic Background: involves: 101/Rl * C3H/Rl

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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