ENSMUSG00000104346


Mus musculus

Features
Gene ID: ENSMUSG00000104346
  
Biological name :Pcdhga3
  
Synonyms : Pcdhga3 / protocadherin gamma subfamily A, 3
  
Possible biological names infered from orthology : Q9Y5H0
  
Species: Mus musculus
  
Chr. number: 18
Strand: 1
Band: B3
Gene start: 37674307
Gene end: 37841873
  
Corresponding Affymetrix probe sets: 1423628_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000073150
NCBI entrez gene - 93711     See in Manteia.
MGI - MGI:1935215
RefSeq - NM_033586
RefSeq Peptide - NP_291064
swissprot - Q91XY5
Ensembl - ENSMUSG00000104346
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh1g2ENSDARG00000101232Danio rerio
 pcdh1gb2ENSDARG00000101307Danio rerio
 pcdh1gb9ENSDARG00000088475Danio rerio
 pcdh2g5ENSDARG00000098788Danio rerio
 PCDHB15ENSDARG00000101338Danio rerio
 ENSGALG00000041306Gallus gallus
 ENSGALG00000042230Gallus gallus
 ENSGALG00000041692Gallus gallus
 ENSGALG00000036159Gallus gallus
 ENSGALG00000041947Gallus gallus
 ENSGALG00000041601Gallus gallus
 ENSGALG00000029700Gallus gallus
 Q9Y5H0ENSG00000254245Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q91XY4 / Pcdhga4 / Protocadherin gamma-A4 / Q9Y5G9* / protocadherin gamma subfamily A, 4*ENSMUSG0000010367774
Pcdhga7 / protocadherin gamma subfamily A, 7 / Q9Y5G6*ENSMUSG0000010347273
Pcdhga5 / protocadherin gamma subfamily A, 5 / Q9Y5G8*ENSMUSG0000010356772
Pcdhga10 / protocadherin gamma subfamily A, 10 / Q9Y5H3*ENSMUSG0000010222272
Pcdhga6 / protocadherin gamma subfamily A, 6 / Q9Y5G7*ENSMUSG0000010379370
Pcdhga8 / protocadherin gamma subfamily A, 8 / Q9Y5G5*ENSMUSG0000010389770
Pcdhga11 / protocadherin gamma subfamily A, 11 / Q9Y5H2*ENSMUSG0000010274269
Pcdhac2ENSMUSG0000010269740
Pcdh10 / protocadherin 10 / Q9P2E7*ENSMUSG0000004910038
Pcdha2 / protocadherin alpha 2ENSMUSG0000010414837
Pcdha3 / protocadherin alpha 3ENSMUSG0000010231237
Pcdh17 / protocadherin 17 / O14917*ENSMUSG0000003556634
Pcdh18 / Q8VHR0 / Protocadherin 18 / Q9HCL0*ENSMUSG0000003789231
Pcdh19 / Q80TF3 / Protocadherin-19 / Q8TAB3*ENSMUSG0000005132330
Pcdh8 / Q7TSK3 / Protocadherin-8 / O95206*ENSMUSG0000003642228
O55134 / Pcdh12 / Protocadherin-12 / Q9NPG4*ENSMUSG0000002444027


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 biological_processGO:0008333 endosome to lysosome transport IMP
 biological_processGO:0060989 lipid tube assembly involved in organelle fusion IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IDA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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