ENSG00000113555


Homo sapiens

Features
Gene ID: ENSG00000113555
  
Biological name :PCDH12
  
Synonyms : PCDH12 / protocadherin 12 / Q9NPG4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q31.3
Gene start: 141943585
Gene end: 141969741
  
Corresponding Affymetrix probe sets: 219656_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000231484
Ensembl peptide - ENSP00000429094
NCBI entrez gene - 51294     See in Manteia.
OMIM - 605622
RefSeq - NM_016580
RefSeq Peptide - NP_057664
swissprot - E5RJD4
swissprot - Q9NPG4
Ensembl - ENSG00000113555
  
Related genetic diseases (OMIM): 251280 - Microcephaly, seizures, spasticity, and brain calcification, 251280
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh12ENSDARG00000076594Danio rerio
 PCDH12ENSGALG00000002544Gallus gallus
 O55134ENSMUSG00000024440Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PCDH18 / Q9HCL0 / protocadherin 18ENSG0000018918434
O14917 / PCDH17 / protocadherin 17ENSG0000011894629
PCDH19 / Q8TAB3 / protocadherin 19ENSG0000016519428
PCDH10 / Q9P2E7 / protocadherin 10ENSG0000013865027
PCDH8 / O95206 / protocadherin 8ENSG0000013609925
O60330 / PCDHGA12 / protocadherin gamma subfamily A, 12ENSG0000025315924
Q9Y5G5 / PCDHGA8 / protocadherin gamma subfamily A, 8ENSG0000025376723
Q9Y5H2 / PCDHGA11 / protocadherin gamma subfamily A, 11ENSG0000025387323
Q9Y5G6 / PCDHGA7 / protocadherin gamma subfamily A, 7ENSG0000025353723
Q9Y5H1 / PCDHGA2 / protocadherin gamma subfamily A, 2ENSG0000008185323
Q9Y5H3 / PCDHGA10 / protocadherin gamma subfamily A, 10ENSG0000025384623
Q9Y5H0 / PCDHGA3 / protocadherin gamma subfamily A, 3ENSG0000025424523
Q9Y5G8 / PCDHGA5 / protocadherin gamma subfamily A, 5ENSG0000025348523
Q9Y5G7 / PCDHGA6 / protocadherin gamma subfamily A, 6ENSG0000025373123
Q9Y5G9 / PCDHGA4 / protocadherin gamma subfamily A, 4ENSG0000026257622
Q9Y5E8 / PCDHB15 / protocadherin beta 15ENSG0000011324821


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030720  Protocadherin-12


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0005977 glycogen metabolic process IEA
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0008038 neuron recognition TAS
 biological_processGO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
 biological_processGO:0060711 labyrinthine layer development IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0005911 cell-cell junction IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0002123 Myoclonic seizures "Myoclonic seizures are sudden, brief losses of consciousness and postural tone not associated with tonic muscular contractions. Myoclonic seizures may involve one body part or the entire body. In the latter case, the myoclonic seizure is accompanied by a violent fall but not by loss of consciousness." [HPO:curators]
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 HP:0002510 Spastic tetraplegia "Spastic paralysis affecting all four limbs." [HPO:curators]
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 HP:0003593 Early onset 
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 HP:0005484 Microcephaly, postnatal 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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