ENSG00000253731


Homo sapiens

Features
Gene ID: ENSG00000253731
  
Biological name :PCDHGA6
  
Synonyms : PCDHGA6 / protocadherin gamma subfamily A, 6 / Q9Y5G7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q31.3
Gene start: 141373914
Gene end: 141512979
  
Corresponding Affymetrix probe sets: 205717_x_at (Human Genome U133 Plus 2.0 Array)   209079_x_at (Human Genome U133 Plus 2.0 Array)   211066_x_at (Human Genome U133 Plus 2.0 Array)   211876_x_at (Human Genome U133 Plus 2.0 Array)   215836_s_at (Human Genome U133 Plus 2.0 Array)   216352_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000429601
Ensembl peptide - ENSP00000479478
NCBI entrez gene - 56109     See in Manteia.
OMIM - 606293
RefSeq - NM_018919
RefSeq - NM_032086
RefSeq Peptide - NP_061742
RefSeq Peptide - NP_114475
swissprot - Q9Y5G7
Ensembl - ENSG00000253731
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000041692Gallus gallus
 ENSGALG00000042230Gallus gallus
 ENSGALG00000036159Gallus gallus
 ENSGALG00000041947Gallus gallus
 ENSGALG00000041601Gallus gallus
 ENSGALG00000029700Gallus gallus
 ENSGALG00000041306Gallus gallus
 Pcdhga6ENSMUSG00000103793Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9Y5H0 / PCDHGA3 / protocadherin gamma subfamily A, 3ENSG0000025424577
Q9Y5G6 / PCDHGA7 / protocadherin gamma subfamily A, 7ENSG0000025353777
Q9Y5H1 / PCDHGA2 / protocadherin gamma subfamily A, 2ENSG0000008185376
Q9Y5G8 / PCDHGA5 / protocadherin gamma subfamily A, 5ENSG0000025348576
Q9Y5H3 / PCDHGA10 / protocadherin gamma subfamily A, 10ENSG0000025384676
Q9Y5G9 / PCDHGA4 / protocadherin gamma subfamily A, 4ENSG0000026257676
Q9Y5G5 / PCDHGA8 / protocadherin gamma subfamily A, 8ENSG0000025376775
O60330 / PCDHGA12 / protocadherin gamma subfamily A, 12ENSG0000025315974
Q9Y5H2 / PCDHGA11 / protocadherin gamma subfamily A, 11ENSG0000025387373
Q9Y5E8 / PCDHB15 / protocadherin beta 15ENSG0000011324840
PCDH10 / Q9P2E7 / protocadherin 10ENSG0000013865040
O14917 / PCDH17 / protocadherin 17ENSG0000011894633
PCDH18 / Q9HCL0 / protocadherin 18ENSG0000018918431
PCDH12 / Q9NPG4 / protocadherin 12ENSG0000011355530
PCDH19 / Q8TAB3 / protocadherin 19ENSG0000016519430
PCDH8 / O95206 / protocadherin 8ENSG0000013609929


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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