ENSG00000165194


Homo sapiens

Features
Gene ID: ENSG00000165194
  
Biological name :PCDH19
  
Synonyms : PCDH19 / protocadherin 19 / Q8TAB3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: -1
Band: q22.1
Gene start: 100291644
Gene end: 100410273
  
Corresponding Affymetrix probe sets: 227282_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000400327
Ensembl peptide - ENSP00000490463
Ensembl peptide - ENSP00000479805
Ensembl peptide - ENSP00000255531
Ensembl peptide - ENSP00000362125
NCBI entrez gene - 57526     See in Manteia.
OMIM - 300460
RefSeq - NM_020766
RefSeq - XM_011530997
RefSeq - NM_001105243
RefSeq - NM_001184880
RefSeq Peptide - NP_001098713
RefSeq Peptide - NP_001171809
RefSeq Peptide - NP_065817
swissprot - A0A1B0GVC8
swissprot - A0A1Y8EN23
swissprot - Q8TAB3
Ensembl - ENSG00000165194
  
Related genetic diseases (OMIM): 300088 - Epileptic encephalopathy, early infantile, 9, 300088
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh19ENSDARG00000034344Danio rerio
 PCDH19ENSGALG00000006822Gallus gallus
 Pcdh19ENSMUSG00000051323Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O14917 / PCDH17 / protocadherin 17ENSG0000011894648
PCDH18 / Q9HCL0 / protocadherin 18ENSG0000018918434
PCDH10 / Q9P2E7 / protocadherin 10ENSG0000013865034
PCDH12 / Q9NPG4 / protocadherin 12ENSG0000011355529
PCDH8 / O95206 / protocadherin 8ENSG0000013609929
Q9Y5G9 / PCDHGA4 / protocadherin gamma subfamily A, 4ENSG0000026257626
Q9Y5G7 / PCDHGA6 / protocadherin gamma subfamily A, 6ENSG0000025373125
Q9Y5G8 / PCDHGA5 / protocadherin gamma subfamily A, 5ENSG0000025348525
Q9Y5H1 / PCDHGA2 / protocadherin gamma subfamily A, 2ENSG0000008185325
Q9Y5H3 / PCDHGA10 / protocadherin gamma subfamily A, 10ENSG0000025384625
Q9Y5G5 / PCDHGA8 / protocadherin gamma subfamily A, 8ENSG0000025376725
Q9Y5H2 / PCDHGA11 / protocadherin gamma subfamily A, 11ENSG0000025387325
O60330 / PCDHGA12 / protocadherin gamma subfamily A, 12ENSG0000025315925
Q9Y5H0 / PCDHGA3 / protocadherin gamma subfamily A, 3ENSG0000025424524
Q9Y5G6 / PCDHGA7 / protocadherin gamma subfamily A, 7ENSG0000025353724
Q9Y5E8 / PCDHB15 / protocadherin beta 15ENSG0000011324822


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030716  Protocadherin-19


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 biological_processGO:0007420 brain development IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001417 X-linked inheritance "A mode of inheritance that is observed for traits related to a gene encoded on the X chromosome." [HPO:curators]
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 HP:0002069 Generalized tonic-clonic seizures "Generalized tonic-clonic seizures are `generalized seizures` (HP:0002197) in which the patient suddenly loses conciousness, the eyes roll back, and the entire body musculature undergoes tonic contractions. In the clonic phase of the seizure, there are rhythmic contractions of the musculature alternating with relaxation of all muscle groups. Loss of sphincter control during the seizure is common. This form of seizure was formerly commonly called grand mal seizure." [HPO:curators]
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 HP:0002121 Absence seizures "Recurrent absence seizures are `generalized seizures` (HP:0002197) that are characterized by a sudden cessation of motor activity and by a blank facial expression with flickering of the eyelids. There is no convulsive muscular activity or loss of postural control." [HPO:probinson]
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 HP:0002123 Myoclonic seizures "Myoclonic seizures are sudden, brief losses of consciousness and postural tone not associated with tonic muscular contractions. Myoclonic seizures may involve one body part or the entire body. In the latter case, the myoclonic seizure is accompanied by a violent fall but not by loss of consciousness." [HPO:curators]
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 HP:0002133 Status epilepticus 
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 HP:0002266 Focal clonic seizures 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002373 Febrile seizures "Febrile seizures are convulsions induced by a fever in infants or small children and are generally characterized by loss of consciousness and tonic-clonic movements. Most febrile seizures last a minute or two." [HPO:curators]
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 HP:0002384 Complex partial seizures "A `partial seizure` (HP:0007359) characterized by impairment or loss of consciousness." [HPO:curators]
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 HP:0003593 Early onset 
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 HP:0007334 Partial seizures with secondary generalization "`Partial seizures` (HP:0007359) with secondary evolution into a `generalized seizures` (HP:0002197)." [HPO:probinson]
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 HP:0007359 Partial seizures "Recurrent partial `seizures` (HP:0001250). In a partial seizure, the electrical disturbance is limited to one part or side of the brain. That is, partial epilepsies are epileptic disorders in which clinical or laboratory findings disclose a localized origin of seizures." [HPO:curators]
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 HP:0010819 Atonic seizures "A type of `seizure` (HP:0001250) characterized by a suddenloss of musle tone. Usually, consciousness is retained. In an atonic seizure, the eyelids may droop, the head may nod, and the person may drop things and fall to the ground." [HPO:probinson]
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 HP:0011151 Obtundation status "Atypical absence lasting for more than 30 minutes." [HPO:jalbers]
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 HP:0012758 Neurodevelopmental delay 
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 HP:0025356 Pschomotor retardation 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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