ENSG00000118946


Homo sapiens

Features
Gene ID: ENSG00000118946
  
Biological name :PCDH17
  
Synonyms : O14917 / PCDH17 / protocadherin 17
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 13
Strand: 1
Band: q21.1
Gene start: 57631810
Gene end: 57729311
  
Corresponding Affymetrix probe sets: 205656_at (Human Genome U133 Plus 2.0 Array)   227289_at (Human Genome U133 Plus 2.0 Array)   228863_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000367151
Ensembl peptide - ENSP00000483215
Ensembl peptide - ENSP00000481329
Ensembl peptide - ENSP00000432899
NCBI entrez gene - 27253     See in Manteia.
OMIM - 611760
RefSeq - XM_005266357
RefSeq - XM_005266358
RefSeq - NM_001040429
RefSeq Peptide - NP_001035519
swissprot - O14917
swissprot - A0A087X099
swissprot - A0A087WXV2
Ensembl - ENSG00000118946
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh17ENSDARG00000027041Danio rerio
 PCDH17ENSGALG00000016941Gallus gallus
 Pcdh17ENSMUSG00000035566Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PCDH19 / Q8TAB3 / protocadherin 19ENSG0000016519447
PCDH10 / Q9P2E7 / protocadherin 10ENSG0000013865035
PCDH18 / Q9HCL0 / protocadherin 18ENSG0000018918435
PCDH12 / Q9NPG4 / protocadherin 12ENSG0000011355530
PCDH8 / O95206 / protocadherin 8ENSG0000013609929
O60330 / PCDHGA12 / protocadherin gamma subfamily A, 12ENSG0000025315928
Q9Y5H3 / PCDHGA10 / protocadherin gamma subfamily A, 10ENSG0000025384627
Q9Y5G8 / PCDHGA5 / protocadherin gamma subfamily A, 5ENSG0000025348527
Q9Y5G7 / PCDHGA6 / protocadherin gamma subfamily A, 6ENSG0000025373127
Q9Y5H2 / PCDHGA11 / protocadherin gamma subfamily A, 11ENSG0000025387327
Q9Y5G6 / PCDHGA7 / protocadherin gamma subfamily A, 7ENSG0000025353727
Q9Y5G9 / PCDHGA4 / protocadherin gamma subfamily A, 4ENSG0000026257627
Q9Y5H1 / PCDHGA2 / protocadherin gamma subfamily A, 2ENSG0000008185326
Q9Y5H0 / PCDHGA3 / protocadherin gamma subfamily A, 3ENSG0000025424526
Q9Y5G5 / PCDHGA8 / protocadherin gamma subfamily A, 8ENSG0000025376726
Q9Y5E8 / PCDHB15 / protocadherin beta 15ENSG0000011324823


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030709  Protocadherin-17


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007416 synapse assembly IBA
 biological_processGO:0030534 adult behavior IEA
 biological_processGO:0050805 negative regulation of synaptic transmission IEA
 biological_processGO:1904071 presynaptic active zone assembly IEA
 biological_processGO:2000807 regulation of synaptic vesicle clustering IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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