ENSG00000253873


Homo sapiens

Features
Gene ID: ENSG00000253873
  
Biological name :PCDHGA11
  
Synonyms : PCDHGA11 / protocadherin gamma subfamily A, 11 / Q9Y5H2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q31.3
Gene start: 141421047
Gene end: 141512979
  
Corresponding Affymetrix probe sets: 205717_x_at (Human Genome U133 Plus 2.0 Array)   209079_x_at (Human Genome U133 Plus 2.0 Array)   211066_x_at (Human Genome U133 Plus 2.0 Array)   211876_x_at (Human Genome U133 Plus 2.0 Array)   211877_s_at (Human Genome U133 Plus 2.0 Array)   215836_s_at (Human Genome U133 Plus 2.0 Array)   216352_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000381589
Ensembl peptide - ENSP00000428333
Ensembl peptide - ENSP00000480917
NCBI entrez gene - 56105     See in Manteia.
OMIM - 606298
RefSeq - NM_032091
RefSeq - NM_018914
RefSeq - NM_032092
RefSeq Peptide - NP_061737
RefSeq Peptide - NP_114480
RefSeq Peptide - NP_114481
swissprot - Q9Y5H2
Ensembl - ENSG00000253873
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000041692Gallus gallus
 ENSGALG00000042230Gallus gallus
 ENSGALG00000036159Gallus gallus
 ENSGALG00000041947Gallus gallus
 ENSGALG00000041601Gallus gallus
 ENSGALG00000029700Gallus gallus
 ENSGALG00000041306Gallus gallus
 Pcdhga11ENSMUSG00000102742Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O60330 / PCDHGA12 / protocadherin gamma subfamily A, 12ENSG0000025315974
Q9Y5H3 / PCDHGA10 / protocadherin gamma subfamily A, 10ENSG0000025384674
Q9Y5G8 / PCDHGA5 / protocadherin gamma subfamily A, 5ENSG0000025348573
Q9Y5H0 / PCDHGA3 / protocadherin gamma subfamily A, 3ENSG0000025424573
Q9Y5G7 / PCDHGA6 / protocadherin gamma subfamily A, 6ENSG0000025373173
Q9Y5G5 / PCDHGA8 / protocadherin gamma subfamily A, 8ENSG0000025376772
Q9Y5G6 / PCDHGA7 / protocadherin gamma subfamily A, 7ENSG0000025353772
Q9Y5G9 / PCDHGA4 / protocadherin gamma subfamily A, 4ENSG0000026257672
Q9Y5H1 / PCDHGA2 / protocadherin gamma subfamily A, 2ENSG0000008185370
PCDH10 / Q9P2E7 / protocadherin 10ENSG0000013865038
Q9Y5E8 / PCDHB15 / protocadherin beta 15ENSG0000011324838
O14917 / PCDH17 / protocadherin 17ENSG0000011894634
PCDH18 / Q9HCL0 / protocadherin 18ENSG0000018918432
PCDH19 / Q8TAB3 / protocadherin 19ENSG0000016519431
PCDH12 / Q9NPG4 / protocadherin 12ENSG0000011355529
PCDH8 / O95206 / protocadherin 8ENSG0000013609928


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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