ENSG00000189184


Homo sapiens

Features
Gene ID: ENSG00000189184
  
Biological name :PCDH18
  
Synonyms : PCDH18 / protocadherin 18 / Q9HCL0
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: -1
Band: q28.3
Gene start: 137518918
Gene end: 137532494
  
Corresponding Affymetrix probe sets: 225975_at (Human Genome U133 Plus 2.0 Array)   225977_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000355082
Ensembl peptide - ENSP00000478176
Ensembl peptide - ENSP00000425903
Ensembl peptide - ENSP00000425647
Ensembl peptide - ENSP00000424269
Ensembl peptide - ENSP00000390688
NCBI entrez gene - 54510     See in Manteia.
OMIM - 608287
RefSeq - XM_017008311
RefSeq - NM_001300828
RefSeq - NM_019035
RefSeq - XM_006714239
RefSeq Peptide - NP_061908
RefSeq Peptide - NP_001287757
swissprot - B4DQ29
swissprot - Q9HCL0
swissprot - B4DLR6
swissprot - A0A087WTW3
swissprot - D6RIG4
Ensembl - ENSG00000189184
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh18aENSDARG00000089805Danio rerio
 pcdh18bENSDARG00000052494Danio rerio
 PCDH18ENSGALG00000009732Gallus gallus
 Pcdh18ENSMUSG00000037892Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O14917 / PCDH17 / protocadherin 17ENSG0000011894636
PCDH12 / Q9NPG4 / protocadherin 12ENSG0000011355535
PCDH19 / Q8TAB3 / protocadherin 19ENSG0000016519434
PCDH8 / O95206 / protocadherin 8ENSG0000013609933
PCDH10 / Q9P2E7 / protocadherin 10ENSG0000013865032
Q9Y5G9 / PCDHGA4 / protocadherin gamma subfamily A, 4ENSG0000026257627
Q9Y5H3 / PCDHGA10 / protocadherin gamma subfamily A, 10ENSG0000025384627
O60330 / PCDHGA12 / protocadherin gamma subfamily A, 12ENSG0000025315927
Q9Y5G8 / PCDHGA5 / protocadherin gamma subfamily A, 5ENSG0000025348526
Q9Y5H0 / PCDHGA3 / protocadherin gamma subfamily A, 3ENSG0000025424526
Q9Y5H1 / PCDHGA2 / protocadherin gamma subfamily A, 2ENSG0000008185326
Q9Y5G6 / PCDHGA7 / protocadherin gamma subfamily A, 7ENSG0000025353726
Q9Y5G7 / PCDHGA6 / protocadherin gamma subfamily A, 6ENSG0000025373126
Q9Y5H2 / PCDHGA11 / protocadherin gamma subfamily A, 11ENSG0000025387326
Q9Y5G5 / PCDHGA8 / protocadherin gamma subfamily A, 8ENSG0000025376726
Q9Y5E8 / PCDHB15 / protocadherin beta 15ENSG0000011324822


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030714  Protocadherin-18


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007420 brain development ISS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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