ENSDARG00000052494


Danio rerio

Features
Gene ID: ENSDARG00000052494
  
Biological name :pcdh18b
  
Synonyms : pcdh18b / protocadherin 18b
  
Possible biological names infered from orthology : PCDH18 / protocadherin 18 / Q8VHR0 / Q9HCL0
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 42172257
Gene end: 42179789
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000068851
Ensembl peptide - ENSDARP00000124086
swissprot - F1QGL4
swissprot - F8W3H1
ZFIN ID - ZDB-GENE-080804-1
Ensembl - ENSDARG00000052494
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PCDH18ENSGALG00000009732Gallus gallus
 PCDH18ENSG00000189184Homo sapiens
 Pcdh18ENSMUSG00000037892Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pcdh18a / protocadherin 18a / PCDH18* / Q9HCL0* / protocadherin 18*ENSDARG0000008980568
pcdh17 / protocadherin 17 / O14917*ENSDARG0000002704136
pcdh12 / protocadherin 12 / O55134* / Q9NPG4*ENSDARG0000007659435
pcdh19 / protocadherin 19 / Q80TF3* / Q8TAB3*ENSDARG0000003434434
pcdh10a / protocadherin 10a / PCDH10* / Q9P2E7* / protocadherin 10*ENSDARG0000009972932
PCDH8 / si:ch211-199f5.1 / O95206* / Q7TSK3* / protocadherin 8*ENSDARG0000010218529
pcdh8 / protocadherin 8 / O95206*ENSDARG0000000646728
si:ch73-233f7.1ENSDARG0000006190927
pcdh2g5 / pcdh2g17 / pcdh2g20 / pcdh2g28 / pcdh2g29 / pcdh2g13 / protocadherin 2 gamma 5 / Q9Y5E8* / PCDHB15* / protocadherin beta 15*ENSDARG0000009878824
pcdh1g30 / protocadherin 1 gamma 30ENSDARG0000010186524
pcdh1g2 / protocadherin 1 gamma 2 / Q9Y5E8* / Q91XY4* / Pcdhga3* / Pcdhga4* / Pcdhga5* / Pcdhga6* / Pcdhga7* / Pcdhga8* / PCDHB15* / Pcdhga10* / Pcdhga11* / protocadherin beta 15* / Protoca...ENSDARG0000010123224
pcdh1gb9 / protocadherin 1 gamma b 9 / Q9Y5E8* / Q91XY4* / Pcdhga3* / Pcdhga4* / Pcdhga5* / Pcdhga6* / Pcdhga7* / Pcdhga8* / PCDHB15* / Pcdhga10* / Pcdhga11* / protocadherin beta 15* / Prot...ENSDARG0000008847524
pcdh1a6 / pcdh1a4 / protocadherin 1 alpha 6 / Pcdha3* / Pcdha2* / protocadherin alpha 2* / protocadherin alpha 3*ENSDARG0000009717023
pcdh1gb2 / protocadherin 1 gamma b 2 / Q9Y5E8* / Q91XY4* / Pcdhga3* / Pcdhga4* / Pcdhga5* / Pcdhga6* / Pcdhga7* / Pcdhga8* / PCDHB15* / Pcdhga10* / Pcdhga11* / protocadherin beta 15* / Prot...ENSDARG0000010130723
pcdh2ab5 / protocadherin 2 alpha b 5 / Pcdha3* / Pcdha2* / protocadherin alpha 2* / protocadherin alpha 3*ENSDARG0000009034823
PCDHB15 / protocadherin beta 15 / Q9Y5E8*ENSDARG0000010133823
pcdh1g31 / protocadherin 1 gamma 31ENSDARG0000010067023
pcdh2ab11 / protocadherin 2 alpha b 11 / Pcdha3* / Pcdha2* / protocadherin alpha 2* / protocadherin alpha 3*ENSDARG0000008959322


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030714  Protocadherin-18


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0048812 neuron projection morphogenesis IMP
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0009243 CaP motoneuron CaP motoneuron has fewer parts of type CaP motoneuron filopodium, abnormal
CaP motoneuron has fewer parts of type primary motor neuron neuron projection, abnormal
CaP motoneuron neuron projection decreased length , abnormal
CaP motoneuron neuron projection decreased branchiness , abnormal
CaP motoneuron collateral sprouting decreased process quality , abnormal
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 ZFA:0009244 primary motor neuron primary motor neuron has fewer parts of type primary motor neuron neuron projection, abnormal
primary motor neuron neuron projection decreased branchiness , abnormal
primary motor neuron collateral sprouting decreased process quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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